Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq46444 185 1e-44 seq553685 183 5e-44 seq1575056 147 3e-33 seq875679 111 2e-22 seq252892 111 2e-22 seq1467185 95.1 2e-17 seq336440 95.1 2e-17 seq1997 86.0 1e-14 seq108992 77.0 5e-12 >seq46444 Length=5579 Score = 185 bits (204), Expect = 1e-44 Identities = 183/234 (78%), Gaps = 7/234 (3%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACC----TGTTATTG 71 || |||||||||| | |||||||||||||||||| |||||||||||| |||||||| Sbjct 4944 TCGGTGTAGCGCGTGAGCGGCCCAGAACATCTAATGGCATCACAGACAGACTTGTTATTG 5003 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATA 131 |||||||||||| | | || | | ||| |||||| ||||||| || | | Sbjct 5004 CCTCAAACTTCCGTCGCCTAACCGACGATATTCCCTCCAAGAAGCTAGTTGCGGAGGGAT 5063 Query 132 GTCGATGGG--GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAA 189 | | || |||| |||||||| | ||||||||||||||| |||||||||||||| || Sbjct 5064 GCCTCTGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATTAACCAGATAA 5123 Query 190 ATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAG 243 ||| ||||||||||||| || |||||||| |||| |||||| | ||||||||| Sbjct 5124 ATCGCTCCACCAACTAATAATAGCCATGCATCACC-CCCATAAAGTCAAGAAAG 5176 >seq553685 Length=3707 Score = 183 bits (202), Expect = 5e-44 Identities = 189/245 (77%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| || | | |||||| ||| | || || || ||||||||||||||||| || Sbjct 119 TACTCGTTGAATACATCAGTGAAGCATGTGTACGACCAAGAACATCTAAGGGCATTGCAT 178 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 || ||||||||||| |||||| | | || | | |||||||||||||||||| || Sbjct 179 ACTTGTTATTGCCTGAAACTTTGTTCGTCTAAACATCCATAGTCCCTCTAAGAAGCTAGA 238 Query 121 CACCAACC-ATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178 | || | || |||| |||| ||| |||||| |||||||| |||||| Sbjct 239 TGGGGAGGGATGGCTCCCCATAGCTAGTTAGTAGGAGCAGGTCTTGTTCGTTAACGGAAT 298 Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 238 ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 299 TAACCAGACAAATTGCTCCACCAACTAAGAACGGCCATGCACTACCACCCATAGAATCAA 358 Query 239 GAAAG 243 ||||| Sbjct 359 GAAAG 363 >seq1575056 Length=814 Score = 147 bits (162), Expect = 3e-33 Identities = 147/186 (79%), Gaps = 6/186 (3%) Strand=Plus/Minus Query 41 AACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAAT 100 ||||| |||||| |||| |||| ||||||||||| ||||| | ||| || | | ||| Sbjct 205 AACATATAAGGGTATCAGAGACTTGTTATTGCCT--AACTTTCGTTGCCTAAACGGTAAT 148 Query 101 AGTCCCTCTAAGAAGCCAGCCACCAACC-ATAG-TCGATGGGGCTATTTAGCAGGTTAAG 158 |||||||| ||||||| ||| || | || | || |||| ||| |||| |||| Sbjct 147 AGTCCCTCGAAGAAGCTAGCTACGGAGGGATGGCTCCGCATAGCTAGTTACCAGGCTAAG 88 Query 159 GTCTCG--TTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCAT 216 |||||| || |||| ||||||||||||||||||||||||||||||||||||| ||| || Sbjct 87 GTCTCGCGTTTGTTAACGGAATTAACCAGACAAATCACTCCACCAACTAAGAAAGGCAAT 28 Query 217 GCACCA 222 |||||| Sbjct 27 GCACCA 22 >seq875679 Length=646 Score = 111 bits (122), Expect = 2e-22 Identities = 61/61 (100%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 586 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 645 Query 76 A 76 | Sbjct 646 A 646 >seq252892 Length=953 Score = 111 bits (122), Expect = 2e-22 Identities = 81/92 (88%), Gaps = 3/92 (3%) Strand=Plus/Minus Query 164 GTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCAC 223 ||| |||| |||||||||| |||| ||||||||||||||||||||||||||||||||| Sbjct 212 GTTGGTTAACGGAATTAAC--GACATATCACTCCACCAACTAAGAACGGCCATGCACCAT 155 Query 224 CACCCATAGAATC-AAGAAAGAGCTATCAATC 254 ||| ||||||||| || ||||| ||||| ||| Sbjct 154 CACACATAGAATCAAAAAAAGATCTATCTATC 123 >seq1467185 Length=324 Score = 95.1 bits (104), Expect = 2e-17 Identities = 60/65 (92%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| || | | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 260 TACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 319 Query 61 ACCTG 65 ||||| Sbjct 320 ACCTG 324 >seq336440 Length=309 Score = 95.1 bits (104), Expect = 2e-17 Identities = 60/65 (92%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| || | | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 65 TACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 6 Query 61 ACCTG 65 ||||| Sbjct 5 ACCTG 1 >seq1997 Length=10190 Score = 86.0 bits (94), Expect = 1e-14 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 20 TGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAAC 79 ||||||| ||||| ||||||||||||||||||||||| ||||| ||| ||||||||||| Sbjct 8213 TGTAGCGTGCGTGTGGCCCAGAACATCTAAGGGCATCGTAGACCCGTTGTTGCCTCAAAC 8272 Query 80 TT 81 || Sbjct 8273 TT 8274 >seq108992 Length=3549 Score = 77.0 bits (84), Expect = 5e-12 Identities = 54/62 (87%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 141 GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACC 200 |||| |||||||| | ||||||| ||||||| || ||||||||||| ||||| ||||||| Sbjct 33 GCTAGTTAGCAGGCTGAGGTCTCATTCGTTAACGAAATTAACCAGAAAAATCGCTCCACC 92 Query 201 AA 202 || Sbjct 93 AA 94 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 784590803667