Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq949059 87.8 3e-15 seq2649 86.0 1e-14 >seq949059 Length=427 Score = 87.8 bits (96), Expect = 3e-15 Identities = 159/230 (69%), Gaps = 7/230 (3%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||| || || ||| ||||| ||||||||| |||||| ||||||||| ||| | Sbjct 403 GGGACACTGCGAGGTGGGTAGTTTATCTGGGGCGGATGCCTCCTAAAGAGTAATGGATGT 344 Query 171 GCCCAAAGATACCCTCA-GCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGT 229 | | ||| || |||| || | ||| | || ||| | || | | ||| | Sbjct 343 GTGCGAAGGTAGGCTCAAGCATTGATTCTGCTCGTGAGCATAATG-----GTATAAGCAT 289 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||| || ||| || ||| | ||| |||||||||||| | || |||||||| | Sbjct 288 GCCTGACTGTGAGACCGTCTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGGAG 229 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 | | | ||||| ||| |||||| | |||| |||| ||| ||||||| Sbjct 228 TCCCGTGTGGAAGGGCTCTCGCTC-AAGGATCAAAGGTACGTCGGGGATA 180 >seq2649 Length=10255 Score = 86.0 bits (94), Expect = 1e-14 Identities = 73/89 (82%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 246 CTCAA--GTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACG 303 ||||| ||| ||||| || |||||||| |||| ||||||| || |||||| |||| | Sbjct 302 CTCAACCGTCGAGCAGAGATGAAAGTCGACCTTAGTGATCCGACGATGCTGAGTGGATGG 243 Query 304 GCCGTCGCTCGACGGATAAAAGCTACCCT 332 ||| |||||||||||||||||| ||| || Sbjct 242 GCCATCGCTCGACGGATAAAAGTTACTCT 214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 966861310432