Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq1455861 172 1e-40 seq1164811 138 3e-30 seq143573 136 9e-30 seq891949 134 3e-29 seq997587 129 1e-27 seq200337 127 5e-27 seq75523 118 2e-24 seq750377 111 4e-22 seq533278 100 7e-19 seq323761 93.3 1e-16 seq149051 80.6 6e-13 seq43402 75.2 3e-11 seq48962 73.4 9e-11 >seq1455861 Length=304 Score = 172 bits (190), Expect = 1e-40 Identities = 176/226 (78%), Gaps = 9/226 (4%) Strand=Plus/Plus Query 179 ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAGCCC 234 ||||||||||||| | || ||| | ||||||||||||| ||| |||| |||| Sbjct 36 ACGCTCCCCTACCGATGCATTTTGACA---TCCCACAGCTTCGGCAGATCGCTTA-GCCC 91 Query 235 CGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGAT 294 || | ||| || |||| | || | ||||||||||||||||||||||| |||| | Sbjct 92 CGTT-CATCTTCAGCGCAAGGGCGCTCTATCAGTGAGCTATTACGCACTCTTTAAAGGGT 150 Query 295 GGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGT 354 ||||||||| | || |||||||||| ||||| ||| | |||| |||||| ||||||| Sbjct 151 GGCTGCTTCTAGGCAAACCTCCTGGCTGTCTTTGCAGCCCCACCTCCTTTATCACTGAGC 210 Query 355 CACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || |||||||||||||||| ||||| ||||||||||||||||| Sbjct 211 GGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 256 >seq1164811 Length=325 Score = 138 bits (152), Expect = 3e-30 Identities = 141/183 (77%), Gaps = 6/183 (3%) Strand=Plus/Plus Query 221 GATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGTGAGCTATTA 277 ||| |||| ||||| || ||||| | | || ||| || |||||||||||||||| Sbjct 96 GATCACTTGAGCCCTGCGACATTTTTAGTGCCATGGAG---CTAGACCAGTGAGCTATTA 152 Query 278 CGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCAC 337 | | |||| |||||| || ||||||||||| |||||||||||||| ||| ||| Sbjct 153 CACTTTCTTCAAAGGATAGCCGCTTCCAAGCCTACCTCCTGGTTGTCATCGCTCGATCAC 212 Query 338 ATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTC 397 |||||| ||||| ||| | ||||||| ||||||| ||| ||||||||||||||||| Sbjct 213 TTCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCGTATGGTCTGGGCTGTTTCCCTC 272 Query 398 TCG 400 ||| Sbjct 273 TCG 275 >seq143573 Length=1214 Score = 136 bits (150), Expect = 9e-30 Identities = 147/192 (77%), Gaps = 7/192 (4%) Strand=Plus/Minus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268 ||||||| | || |||| ||||| | ||||| ||| || ||| || ||||||| Sbjct 453 GCTTCGGTGAATCACTTGAGCCCTGAGACATTTTCGATGCTATGGAG---CTAGACCAGT 397 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328 |||||||||||| |||| ||||||||||||||||||||| ||| |||||||||| || Sbjct 396 GAGCTATTACGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCACCTGGTTGTCATCG 337 Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388 ||| |||||| ||||| ||| | ||||||| ||||||| ||| |||||||| Sbjct 336 TTGGATCACTTCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCGTATGTTCTGGGCT 277 Query 389 GTTTCCCTCTCG 400 | |||| ||||| Sbjct 276 G-TTCCGTCTCG 266 >seq891949 Length=448 Score = 134 bits (148), Expect = 3e-29 Identities = 113/139 (81%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 262 GACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTT 321 ||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||| Sbjct 447 GACCAGTGAGCTATTACGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTGGTT 388 Query 322 GTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGAT 381 ||| ||| ||| |||||| ||||| ||| | ||||||| ||||| | | ||| Sbjct 387 GTCATCGCTCGATCACTTCCTTTTCCACTAAGTGATTGCTTAGGGACCTTACCGTACGAT 328 Query 382 CTGGGCTGTTTCCCTCTCG 400 |||||| ||||||||||| Sbjct 327 TTGGGCTATTTCCCTCTCG 309 >seq997587 Length=353 Score = 129 bits (142), Expect = 1e-27 Identities = 138/182 (76%), Gaps = 6/182 (3%) Strand=Plus/Plus Query 222 ATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGTGAGCTATTAC 278 || |||| ||||| | ||||| |||| || ||| || |||||||||||||||| Sbjct 1 ATCACTTGAGCCCTGAGACATTTTCGGTGCCATGGAG---CTAGACCAGTGAGCTATTAN 57 Query 279 GCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACA 338 |||| ||||||||||||||||||||| |||||||||||| | ||| ||| Sbjct 58 NNTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTGCCATCGCTCGATCACT 117 Query 339 TCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 || ||| ||||| ||| | |||||| ||||||| | |||||||||||||||||||| Sbjct 118 TCATTTTCCACTAAGTGATTGTTTAGGGACCTTAGCGTACGATCTGGGCTGTTTCCCTCT 177 Query 399 CG 400 || Sbjct 178 CG 179 >seq200337 Length=971 Score = 127 bits (140), Expect = 5e-27 Identities = 144/192 (75%), Gaps = 6/192 (3%) Strand=Plus/Minus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268 ||||||| | || |||| ||||| | ||||| || | || ||| || ||| ||| Sbjct 454 GCTTCGGTGAATCACTTGAGCCCTGAGACATTTTCAGTGCCATGGAG---CTAGACTAGT 398 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328 |||||||||||| |||| |||||||||||||||||| | ||||||| |||||| || Sbjct 397 GAGCTATTACGCTTTCTTCAAAGGATGGCTGCTTCCAATTCCACCTCCTAGTTGTCATCG 338 Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388 | ||| |||||| ||||| ||| | ||||||| ||||||| | ||||| |||| Sbjct 337 CTCGATCACTTCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCATACGATCTAGGCT 278 Query 389 GTTTCCCTCTCG 400 |||| |||||| Sbjct 277 ATTTCTCTCTCG 266 >seq75523 Length=1432 Score = 118 bits (130), Expect = 2e-24 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 259 CTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTG 318 || ||| ||||||||||||||| |||| |||||||||||||||||||| | |||||| Sbjct 867 CTAGACTAGTGAGCTATTACGCTTTCTTCAGAGGATGGCTGCTTCCAAGCCCAGCTCCTG 926 Query 319 GTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGAT 378 |||||| || ||| |||||| |||| ||| | ||||||| |||||| || Sbjct 927 GTTGTCATTGCTCGATCACTTCCTTTTCCACAAAGTGATTGCTTAGGGACCTTAGTGTAT 986 Query 379 GATCTGGGCTGTTTCCCTCT 398 |||||||| ||||||||||| Sbjct 987 GATCTGGGTTGTTTCCCTCT 1006 >seq750377 Length=417 Score = 111 bits (122), Expect = 4e-22 Identities = 91/111 (82%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 289 AAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCA 348 ||||||||||||||||||||| |||||||||||||| ||| ||| |||||| ||| Sbjct 416 AAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTGTCATCGCTCGATCACTTCCTTTTCCA 357 Query 349 CTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTC 399 || ||| | ||||||| ||||||| | |||||||| |||||||||||| Sbjct 356 CTAAGTGATTGCTTAGGGACCTTAGCGTACGATCTGGGTTGTTTCCCTCTC 306 >seq533278 Length=4394 Score = 100 bits (110), Expect = 7e-19 Identities = 101/130 (78%), Gaps = 1/130 (1%) Strand=Plus/Minus Query 259 CTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTG 318 || || |||||||||||||||||||| || |||| ||| | |||| | | ||||||||| Sbjct 626 CTCGATCAGTGAGCTATTACGCACTCCTTAAAGGCTGGTTACTTCAAGGAAAACCTCCTG 567 Query 319 GTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGAT 378 | ||||| || || | | |||||| |||||||| || |||| | ||||||||| | Sbjct 566 GCTGTCTTTGC-ACCCTAGCTCCTTTATCACTGAGTGGTCATTTAGAGACCTTAGCTGGT 508 Query 379 GATCTGGGCT 388 |||| ||||| Sbjct 507 GATCCGGGCT 498 >seq323761 Length=4838 Score = 93.3 bits (102), Expect = 1e-16 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 259 CTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTG 318 || ||||||||||||||||||| |||| ||||||||||||||||||||| |||||||| Sbjct 78 CTAGACCAGTGAGCTATTACGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTG 19 Query 319 GTTGTC 324 |||||| Sbjct 18 GTTGTC 13 >seq149051 Length=630 Score = 80.6 bits (88), Expect = 6e-13 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 259 CTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTG 318 || || ||||||||||||||||||||||| |||| |||||||||| | || |||||| || Sbjct 331 CTCGATCAGTGAGCTATTACGCACTCTTTAAAGGGTGGCTGCTTCTAGGCAAACCTCATG 390 Query 319 GTTGTCT 325 | ||||| Sbjct 391 GCTGTCT 397 >seq43402 Length=6940 Score = 75.2 bits (82), Expect = 3e-11 Identities = 120/170 (71%), Gaps = 3/170 (2%) Strand=Plus/Minus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266 ||||||||||||| ||| |||| ||| | ||| || || | || || || Sbjct 2348 CCACAGCTTCGGCAGATTGCTTAGACCCA--TTCATCTTCTGCATAAGGGCGCTCGATCA 2291 Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326 |||||||||||| |||||||| |||| |||||||||| | || |||| | ||||||| Sbjct 2290 GTGAGCTATTACACACTCTTTAAAGGGTGGCTGCTTCTAGGCAAACCACAGAGTTGTCTT 2231 Query 327 CGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTG 376 ||| | ||| | |||| | || | || |||| ||||||||||| Sbjct 2230 TGCACCCTCACCTTCTTTATAAATGGGCGTTCA-TTAGAGGCCTTAGCTG 2182 >seq48962 Length=14858 Score = 73.4 bits (80), Expect = 9e-11 Identities = 52/60 (87%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 266 AGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCT 325 ||||||||||||| |||||||| |||| |||||||||| | || |||||| ||| ||||| Sbjct 1033 AGTGAGCTATTACTCACTCTTTAAAGGGTGGCTGCTTCTAGGCAAACCTCATGGCTGTCT 974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158973818368