Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq425426 143 4e-32 seq360512 107 3e-21 seq444121 100 5e-19 seq384462 98.7 2e-18 seq1339792 95.1 2e-17 seq1360953 93.3 7e-17 seq1309724 91.5 2e-16 seq243206 87.8 3e-15 seq862501 77.0 5e-12 >seq425426 Length=1431 Score = 143 bits (158), Expect = 4e-32 Identities = 205/288 (71%), Gaps = 8/288 (3%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||| |||||||| || ||||||| || |||| | | |||||||| ||| || Sbjct 555 CCCATGCTTTCGCACCCCAGCGTCGGTAGGGACCCAGAGAGCTGCCTTCGCTTTTGGCGT 614 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||| |||| ||||||| |||||||| ||||||||| |||||| | ||||| ||| Sbjct 615 TCCTTCGTAGATCTACGGATTTCACCCCTACACACGAAATTCCACTCTCCTCTGTCTCAC 674 Query 121 TCAAGAAAAACAGTTTCAAATGCAG---GCTATGGGTTGAGCCCATAGTTTTCACATCTG 177 ||||| || ||||| | ||| || | ||| | |||||| | Sbjct 675 TCAAGTGAATTGGTTTCGAGAGCATTCCGCCACTTTTTGGCGAC-----TTTCACTTTCA 729 Query 178 ACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCT 237 || | | |||||||| ||||||||| |||| | | |||| | ||| |||||| || Sbjct 730 ACCCGATTCACCGCCTACGTGCCCTTTACGCCCAGTCATTCCGAAGAACACTTGCCCCCC 789 Query 238 ACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285 ||| |||||||||||||||||||| ||||||||| ||||| |||||| Sbjct 790 CCGTCTTACCGCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTC 837 >seq360512 Length=3013 Score = 107 bits (118), Expect = 3e-21 Identities = 197/287 (69%), Gaps = 10/287 (3%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||| |||||||| || ||||||| || |||| | | |||||| | ||| || Sbjct 2573 CCCATGCTTTCGCACCCCAGCGTCGGTAGGGACCCAGAGAGCTGCCTTCACTTTTGGCGT 2632 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||| |||| ||||||| |||||||| ||||||| | |||| | | ||||| ||| Sbjct 2633 TCCTTCGTAGATCTACGGATTTCACCCCTACACATGAAATTTCACTCTCCTCTGTCTCAC 2692 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGT---TTTCACATCTG 177 ||||| || |||| | ||| || || | || |||||| | Sbjct 2693 TCAAGTGAATTGGTTTTGAGAGCATTCTGCCACTTTT-----TGGTGACTTTCACTTTCA 2747 Query 178 ACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCT 237 || | | |||||||| || ||||||| ||| | | |||| | ||| ||| || || Sbjct 2748 ACCCGATTCACCGCCTACGTGCTCTTTACATCCAGTCATTCCGAAGAACACTTTCCCCC- 2806 Query 238 ACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCT 284 ||| ||||||| |||||||||| | ||||||||||||||| ||||| Sbjct 2807 -CGTTTTACCGCAGCTGCTGGCATGGAGTTAGCCGTGGCTTCTTCCT 2852 >seq444121 Length=635 Score = 100 bits (110), Expect = 5e-19 Identities = 84/103 (82%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || |||||| |||||| |||||| | |||||||||||||||| ||| || ||| | Sbjct 217 CCACCTACAGATGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTCTTATC 158 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||| ||||||||| ||||||||||||| || Sbjct 157 GCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCTCAGATA 115 >seq384462 Length=533 Score = 98.7 bits (108), Expect = 2e-18 Identities = 195/285 (68%), Gaps = 23/285 (8%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||| |||||||| || ||||||| || |||| | | |||||||| ||| || Sbjct 485 CCCATGCTTTCGCACCCCAGCGTCGGTAGGGACCCAGAGAGCTGCCTTCGCTTTTGGCGT 426 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||| |||| ||||||| ||||||| |||||||| |||||| | ||||| ||| Sbjct 425 TCCTTCGTAGATCTACGGATTTCACA-CTACACACAAAATTCCACTCTCCTCTGTCTCAC 367 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 ||||| || |||| | ||| || ||| | ||| || || | | Sbjct 366 TCAAGTGAATTGGTTTTGAGAGCA---------TTCCGCC---ACTTT---CAACTCAAT 322 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 | | ||||||| ||||||||| |||| | | |||| | || ||| || || || Sbjct 321 TCAC----CGCCTACGTGCCCTTTACGCCCAGTCATTCCGAA--ACACTTCCCCCCC-CG 269 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285 | ||||||||||| |||||| ||||||||| ||||| |||||| Sbjct 268 TCTTACCGCGGCTATTGGCACAGAGTTAGCCGGGGCTTCTTCCTC 224 >seq1339792 Length=361 Score = 95.1 bits (104), Expect = 2e-17 Identities = 196/289 (68%), Gaps = 7/289 (2%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||| |||||||| || ||||||| || |||| | | ||||||| |||||| Sbjct 52 CCCATGCTTTCGCACCCCAGCGTCGGTAGGGACCCAGAGAGCTGCCTTCGATTTTGGTGT 111 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||| ||| ||||| | ||||||| ||||||||| |||| | | ||||| ||| Sbjct 112 TCCTTCGTGGATCTATGAATTTCACACCTACACACGAAATTGCACTCTCCTCTGTCTCAC 171 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGG-TTGAGCCCATAGTTTTCACATCTGAC 179 | || || ||||| | ||| | | || | | | |||||| | || Sbjct 172 TGAAATGAATTGGTTTCGAGAGCATTCCACCACATTTTGGCGAC---TTTCACTTTCAAC 228 Query 180 TTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCA---CC 236 | | |||| ||| ||||| ||| || | | | |||| | ||| |||||| || Sbjct 229 CCGATTCACCGCGTACGTGCCCTCTACGCCAAGTCATTCCGAAGAACACTTGCCCTGCCC 288 Query 237 TACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285 ||| |||||||||||||||||||| ||||||||| ||||| |||||| Sbjct 289 CCCGTCTTACCGCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTC 337 >seq1360953 Length=350 Score = 93.3 bits (102), Expect = 7e-17 Identities = 80/98 (82%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 |||||||| | ||||||| |||| | | |||| | ||| |||||| || ||| ||||| Sbjct 256 CCGCCTACGTGACCTTTACGCCCAGTCATTCCGAAGAACACTTGCCCCC--CGTCTTACC 199 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285 ||||||||||||||| ||||||| | ||||| |||||| Sbjct 198 GCGGCTGCTGGCACGGAGTTAGCTGGGGCTTCTTCCTC 161 >seq1309724 Length=340 Score = 91.5 bits (100), Expect = 2e-16 Identities = 82/103 (80%), Gaps = 5/103 (5%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTAC-----GTA 242 |||||||| ||||||||| |||| | | |||| | ||| |||||| || | || Sbjct 326 CCGCCTACGTGCCCTTTACGCCCAGTCATTCCGAAGAACACTTGCCCCCCCCCCCTCGTC 267 Query 243 TTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285 |||||||||||||||||||| ||||||||| ||||| |||||| Sbjct 266 TTACCGCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTC 224 >seq243206 Length=1854 Score = 87.8 bits (96), Expect = 3e-15 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || |||||| | |||| | |||||| | ||||||||||| |||| || |||||||| Sbjct 1087 CCACCTACAGACGCTTTGCGCCCAATCATTCCGGATAACGTTTGCATTCTCTGTATTACC 1028 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285 ||||||||| |||| |||||| || ||||||||||| Sbjct 1027 GCGGCTGCTAGCACAGAGTTAGTCGGTGCTTATTCCTC 990 >seq862501 Length=946 Score = 77.0 bits (84), Expect = 5e-12 Identities = 65/80 (81%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || |||||| | |||||| |||||| | || ||||||||||||| ||| || ||||| Sbjct 17 CCACCTACAGACGCTTTACGCCCAATCATTCTGGATAACGCTTGCATCCTCTGTCTTACC 76 Query 248 GCGGCTGCTGGCACGTAGTT 267 |||||||||||||| |||| Sbjct 77 GCGGCTGCTGGCACAGAGTT 96 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 816100474497