Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq910830 226 4e-57 seq161524 181 2e-43 seq515439 167 4e-39 seq1517740 149 1e-33 seq4825 132 7e-29 seq688317 131 3e-28 seq949059 129 9e-28 seq43402 127 3e-27 seq578233 116 6e-24 seq128976 114 2e-23 seq1495791 89.7 8e-16 seq149530 84.2 3e-14 seq739544 77.0 5e-12 seq541668 77.0 5e-12 seq443685 77.0 5e-12 seq1485634 75.2 2e-11 seq653436 75.2 2e-11 seq665026 73.4 6e-11 >seq910830 Length=322 Score = 226 bits (250), Expect = 4e-57 Identities = 214/273 (78%), Gaps = 1/273 (0%) Strand=Plus/Minus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| |||| |||| |||||| ||| ||| |||| ||| |||||| Sbjct 289 GGTGGGCTTACTACTTATATGCTTTCAGCANNNNTCCTCTCCGCACTTGGCTACCCAGCA 230 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||| |||||||||| |||| |||||||||||| ||||| Sbjct 229 TTTACCGTAGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTTGTACT 170 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || |||||||| |||||| ||||||||||||||| || Sbjct 169 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACG 110 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 ||||||||||||| |||| || |||| ||||||||||||||||||||||||||| ||| Sbjct 109 ACGTTCTGAACCCTGCTCATGTACCTCATTAATGGGCGAACAGCCCAACCCTTGGAACCA 50 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 || |||| | ||| | || |||||||||||| Sbjct 49 CCTACAGCTCTAGGTGGTGAAGAGCCGACATCG 17 >seq161524 Length=890 Score = 181 bits (200), Expect = 2e-43 Identities = 180/233 (77%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 47 AACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATC 106 ||||||||| ||| | |||| |||||| ||||||||| ||||| ||||| ||| | Sbjct 363 AACTTAGCTGCCCGACGATGCTATTGGCATAACAACTGGTACACCACAGGTTGACCCAGC 422 Query 107 CCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT----ACGCCCACGACGGAT 162 || |||||||||||||| || ||||||| || | ||| || || ||| ||| Sbjct 423 CCAGTCCTCTCGTACTAGGGCTGGCTCCTCGCAGTTCTCCCTTTAACACCAACGGTAGAT 482 Query 163 AGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAA 222 ||| ||| ||||||||| ||||||||| |||||| ||| | | || |||| || ||| || Sbjct 483 AGGAACCAAACTGTCTCACGACGTTCTAAACCCAACTCACATACCACTTTCATCGGCAAA 542 Query 223 CAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 || || |||||||||||||| |||| |||||||||| || ||| |||||||| Sbjct 543 CAACCGAACCCTTGGGACCTTGTTCAACCCCAGGATGTGATGAGTCGACATCG 595 >seq515439 Length=3167 Score = 167 bits (184), Expect = 4e-39 Identities = 142/174 (82%), Gaps = 1/174 (1%) Strand=Plus/Minus Query 83 TGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAAT 142 |||| ||||| || | |||| ||| ||||||||||||||| ||| || ||||||||| Sbjct 179 TGGTACACCAAAGATGCGTCCTTCCTGGTCCTCTCGTACTAGGGAAAGGTCCTCTCAATG 120 Query 143 TTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGC 202 || |||||||| |||||| |||||||||||||| ||| |||||||| ||||||| | Sbjct 119 CTCTAACGCCCACACCGGATATGGACCGAACTGTCTAACGATGTTCTGAA-CCAGCTCAC 61 Query 203 GTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGG 256 || || | |||||||||||||| |||||||||||| ||| || |||| ||||| Sbjct 60 GTACCGCATTAATGGGCGAACAACCCAACCCTTGGAACCACCTACAGCTCCAGG 7 >seq1517740 Length=1085 Score = 149 bits (164), Expect = 1e-33 Identities = 179/242 (74%), Gaps = 5/242 (2%) Strand=Plus/Minus Query 38 TCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGCACCAGAGGT 97 ||| | ||||| |||| | |||| | ||| ||| || ||||| || ||||| |||| Sbjct 516 TCCATACCAAA-TTAGTTGCCCAACACTGCTATTGTCATAACAACCAGTACACCATAGGT 458 Query 98 TTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT----ACGCCC 153 | ||| ||| |||||||| |||| || ||||||| || | ||| || || Sbjct 457 TGACCCAGCCCAGTCCTCTCACACTAGGGCTGGCTCCTCACAGTTCTCCCTTTAACACCA 398 Query 154 ACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTA 213 || |||||| ||||||||||||| |||||||| |||||| ||| | | || |||| Sbjct 397 ACTGTAGATAGGAACCGAACTGTCTCATGACGTTCTAAACCCAACTCACTTACCACTTTC 338 Query 214 ATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACAT 273 || || |||| || |||||||||||||| ||||| |||||||||| || ||| |||||| Sbjct 337 ATCCGCAAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATGAGTCGACAT 278 Query 274 CG 275 || Sbjct 277 CG 276 >seq4825 Length=4391 Score = 132 bits (146), Expect = 7e-29 Identities = 100/118 (85%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 158 CGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGG 217 |||||| ||||||||||||||| ||| |||||||||||||||| ||| || | ||||||| Sbjct 737 CGGATATGGACCGAACTGTCTCACGATGTTCTGAACCCAGCTCACGTACCGCATTAATGG 678 Query 218 GCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 || |||||||||||||||| ||| || |||| ||||| | || |||||||||||| Sbjct 677 GCAAACAGCCCAACCCTTGAAACCACCTACAGCTCCAGGTGGCGAAGAGCCGACATCG 620 >seq688317 Length=305 Score = 131 bits (144), Expect = 3e-28 Identities = 153/210 (73%), Gaps = 4/210 (2%) Strand=Plus/Plus Query 47 AACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATC 106 ||||||||| ||| || || |||||| ||||||||| ||||| | | Sbjct 96 AACTTAGCTGCCCGGCGCTGTTATTGGCATAACAACTGGTACACCATNNNNNNNNNNAGC 155 Query 107 CCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT----ACGCCCACGACGGAT 162 || |||||||||||||| || ||||||| || | ||| || | | | ||| Sbjct 156 CCAGTCCTCTCGTACTAGGGCTGGCTCCTCGCAGTTCTCCCTTTAACACAAAAGGTAGAT 215 Query 163 AGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAA 222 ||| ||| ||||||||| ||||||||| |||||| ||| ||| || |||| || |||||| Sbjct 216 AGGAACCAAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTCATCGGCGAA 275 Query 223 CAGCCCAACCCTTGGGACCTACTTCAGCCC 252 || || |||||||||||||| ||||| ||| Sbjct 276 CAACCGAACCCTTGGGACCTTCTTCAACCC 305 >seq949059 Length=427 Score = 129 bits (142), Expect = 9e-28 Identities = 98/116 (84%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 160 GATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGC 219 |||||| ||||||||||||| ||||||||| |||||| ||| ||| || |||| || ||| Sbjct 14 GATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTCATCGGC 73 Query 220 GAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||||| || |||||||||||||| ||||| ||| |||||| || ||| | |||||| Sbjct 74 GAACAACCGAACCCTTGGGACCTTCTTCAACCCTAGGATGTGATGAGTCTACATCG 129 >seq43402 Length=6940 Score = 127 bits (140), Expect = 3e-27 Identities = 191/270 (71%), Gaps = 1/270 (0%) Strand=Plus/Minus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCT 63 || |||||| |||| |||| |||| | |||| | ||| |||| ||| || | | Sbjct 4005 GGTGGGCTTACTACTTATATGCTTTCAACAGTTATTCTCTCCGCACTTTGCTACCAAACG 3946 Query 64 ATGCACTT-GGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | || || |||||| || |||||||||| | | |||||| |||||| |||| Sbjct 3945 TTTAGCGTAGGAAGGACAACTTGTACACCAGAGGTGCATTCTTCCCGGCCCTCTCATACT 3886 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || |||| |||| ||| || |||| |||||| | | | |||| |||| || Sbjct 3885 AGGGAAAGGTCCTTTCAATGTTCTAACATCCACACCGGATATGTATCAAACTTTCTCACG 3826 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 | ||||||||||||||| | || | ||||| ||||| |||||||||||| ||| Sbjct 3825 ATGTTCTGAACCCAGCTGATGGGCTCCATTAATTAACGAACTACCCAACCCTTGGAACCA 3766 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACA 272 | |||| | ||| | || ||||||||| Sbjct 3765 CCAACAGCTCGAGGTGGCGAAGAGCCGACA 3736 >seq578233 Length=2793 Score = 116 bits (128), Expect = 6e-24 Identities = 96/116 (83%), Gaps = 1/116 (1%) Strand=Plus/Plus Query 160 GATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGC 219 |||||| ||| ||||||||| |||||||| |||||| ||| ||| || |||| || ||| Sbjct 1370 GATAGGAACCAAACTGTCTCATGACGTTCTAAACCCACCTCACGTACCACTTTCATCGGC 1429 Query 220 GAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||||| || |||||||||||||| ||||| ||||||||| || ||| ||||| || Sbjct 1430 GAACAACCGAACCCTTGGGACCTTCTTCA-ACCCAGGATGTGATGAGTCGACACCG 1484 >seq128976 Length=1162 Score = 114 bits (126), Expect = 2e-23 Identities = 95/116 (82%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 160 GATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGC 219 ||||| |||| |||||||| ||| ||||| |||| | || ||| || |||| || ||| Sbjct 397 GATAGACACCGTACTGTCTCACGATGTTCTAAACCTAACTGACGTACCACTTTGATCGGC 338 Query 220 GAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||||| || |||||||||||||| ||||| |||||||||| || ||| |||||||| Sbjct 337 GAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATGAGTCGACATCG 282 >seq1495791 Length=7766 Score = 89.7 bits (98), Expect = 8e-16 Identities = 156/226 (69%), Gaps = 11/226 (5%) Strand=Plus/Minus Query 35 TTATCCCTTCCAAACTTAGCTTCCCAGC-TATGCACTTGGCAGTACAACTGGTGCACCAG 93 |||||| ||| | |||| ||| || || | || | |||| | ||| ||| || ||| Sbjct 7089 TTATCCTTTCTATACTTGGCTACCTAGTGTTTGTCATAGGCACCATAACCGGTACATCAG 7030 Query 94 AGGT-----TTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCTA 148 |||| ||||||| || |||||||| || ||| | | ||| || || | Sbjct 7029 AGGTGCATATTGTCCA-----GTTCTCTCGTAGTAGGGAAACATGCTCACATTGCTCTAA 6975 Query 149 CGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCT 208 |||| || | | | ||||||| |||||| |||| || | |||||||||| ||| || Sbjct 6974 CGCCTACACAGAAAATAGACCGAAATGTCTCACGACATTTTAAACCCAGCTCACGTACCG 6915 Query 209 CTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCA 254 | |||||||||||||| | ||||| || | ||| | |||| ||| Sbjct 6914 CATTAATGGGCGAACAACTCAACCTTTAGAACCACCAACAGCTCCA 6869 >seq149530 Length=749 Score = 84.2 bits (92), Expect = 3e-14 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 170 GAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCA 229 |||||||||| |||||| | |||||| ||| ||| || ||| || ||||| || || | Sbjct 667 GAACTGTCTCATGACGTTTTAAACCCAACTCACGTACCAGTTTCATCGGCGAGCAACCGA 608 Query 230 ACCCTTGGGACCTACTTCAGCCCCAG 255 ||||||||||||| ||||| |||||| Sbjct 607 ACCCTTGGGACCTTCTTCAACCCCAG 582 >seq739544 Length=317 Score = 77.0 bits (84), Expect = 5e-12 Identities = 64/77 (83%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 198 CTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGA 257 ||| ||| || |||| || |||||||| || |||||||||||||| ||||| ||||||| Sbjct 317 CTCACGTACCACTTTCATCGGCGAACAACCGAACCCTTGGGACCTTCTTCA-ACCCAGGA 259 Query 258 TGAGACGAGCCGACATC 274 || || ||| ||||||| Sbjct 258 TGTGATGAGTCGACATC 242 >seq541668 Length=2016 Score = 77.0 bits (84), Expect = 5e-12 Identities = 81/107 (76%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 167 ACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGC 226 || |||||| ||| | | ||||||||||| ||| ||| || | ||||||| |||||| | Sbjct 1421 ACAGAACTGCCTCACAATATTCTGAACCCAACTCACGTACCACATTAATGGCCGAACAAC 1480 Query 227 CCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACAT 273 |||| |||||| ||| | || | ||||| | | |||||||||| Sbjct 1481 CCAAACCTTGGAACCACGTACAACTCCAGGTGGCAAAGAGCCGACAT 1527 >seq443685 Length=2539 Score = 77.0 bits (84), Expect = 5e-12 Identities = 57/67 (85%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 72 GGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGC 131 |||| | ||||||| |||||||||| |||| ||||||||||||||||||| ||| || Sbjct 2351 GGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACTAGGGAAAGG 2292 Query 132 TCCTCTC 138 ||||||| Sbjct 2291 TCCTCTC 2285 >seq1485634 Length=4222 Score = 75.2 bits (82), Expect = 2e-11 Identities = 86/116 (74%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 160 GATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGC 219 |||| | || ||||| |||| || |||| ||| || || |||| || |||| || || Sbjct 3248 GATATGAACTGAACTATCTCATGATATTCTAAACACATCTAGCGTACCACTTTCATCAGC 3189 Query 220 GAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| | |||||||||||||| ||||| || | ||||| || ||| | |||||| Sbjct 3188 GAAAAATTGAACCCTTGGGACCTTCTTCAACCTCGGGATGTGATGAGACAACATCG 3133 >seq653436 Length=1882 Score = 75.2 bits (82), Expect = 2e-11 Identities = 137/196 (70%), Gaps = 5/196 (3%) Strand=Plus/Plus Query 7 GGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATG 66 |||||| | |||| |||| | || | ||||| ||| |||||||| |||| ||| Sbjct 357 GGGCTTAGTACTTATATGCTTCCAACAGTTATCATCTCCGCACTTAGCTACCCAA-TATT 415 Query 67 CACTT--GGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAA 124 | | | | | | ||||| | |||||||||| ||||| || | || |||| |||| Sbjct 416 TATTGTAGACCGGATAACTGATACACCAGAGGTGTGTCCTTCTAGATCGTCTCAGACTAC 475 Query 125 GGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGAC 184 | |||||||||||| ||| || ||| | | |||| |||| |||||||| || Sbjct 476 TAAAAGCTCCTCTCAATACTCCAACACCCTCACCCGATA-CGACCAGACTGTCTCATGA- 533 Query 185 GTTCTGAACCCAGCTC 200 | ||||||||||||| Sbjct 534 TTCCTGAACCCAGCTC 549 >seq665026 Length=741 Score = 73.4 bits (80), Expect = 6e-11 Identities = 81/108 (75%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88 |||| || | || | | ||||||||| ||| || ||| |||||| ||||| ||| | Sbjct 634 CAGCAGTTCTTCCATACCAACTTAGCTGCCCGGCGCTGCTATTGGCATAACAACCGGTAC 693 Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTC 136 |||| ||||| ||| ||| |||||||||||||| || ||||||| Sbjct 694 ACCATAGGTTGACCCAGCCCAGTCCTCTCGTACTAGGGCTGGCTCCTC 741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 768835968252