Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq336440 201 2e-49 seq875679 196 9e-48 seq1467185 136 7e-30 seq553685 134 3e-29 seq1997 129 1e-27 seq46444 113 8e-23 seq548166 107 4e-21 >seq336440 Length=309 Score = 201 bits (222), Expect = 2e-49 Identities = 166/208 (80%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 121 CAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAAC 180 |||||||||||||||||||||||||||||||||||||||||||||||||| | |||| Sbjct 1 CAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAAC 60 Query 181 GAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGA 240 |||| || ||||||||| ||| | ||||||||||| ||| | ||||| |||||| Sbjct 61 GAGTATATAGCCTTGGCCGACAGGCCCGGGTAATCTTGGCAAATTTCATCGTGATGGGGA 120 Query 241 TAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCA 300 |||| | |||||||||||||||||||||||||| ||||||||| Sbjct 121 TAGATCNNNNNNNNNNNNNNNNNTCAACGAGGAATGCCTAGTAAGCGCGAGTCATCAGCT 180 Query 301 CGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||||||| || |||||||||||||||| Sbjct 181 CGCGTTGACTATGTCCCTGCCCTTTGTA 208 >seq875679 Length=646 Score = 196 bits (216), Expect = 9e-48 Identities = 172/219 (79%), Gaps = 18/219 (8%) Strand=Plus/Minus Query 110 TGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTG 169 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 646 TGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTG 587 Query 170 ACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGT 229 | | |||| ||| || ||||||||| ||| | ||||||||||| ||| | | Sbjct 586 ATGTATTCAACAAGTATATAGCCTTGGCCGACAGGCCCGGGTAATCTTGGGAAATTTCAT 527 Query 230 CGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCG 289 || | |||| ||| ||||||||||||||||||||||||||||| Sbjct 526 CG------------------GGAATTGTTGGTCTTCAACGAGGAATGCCTAGTAAGCGCG 485 Query 290 TGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||||||| | |||||| ||||||| |||| |||||| Sbjct 484 AGTCATCAGCTCACGTTGACTACGTCCATGCCATTTGTA 446 >seq1467185 Length=324 Score = 136 bits (150), Expect = 7e-30 Identities = 131/175 (75%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 121 CAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAAC 180 |||||||||||||||||||||||||||||||||||||||||||||||||| | |||| Sbjct 324 CAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAAC 265 Query 181 GAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGA 240 |||| || ||||||||| ||| | | |||||||| ||| | ||||| |||||| Sbjct 264 GAGTATATAGCCTTGGCCGACAGGCCCAGTTAATCTTGGGAAATTTCATCGTGATGGGGA 205 Query 241 TAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCAT 295 |||||||||||||||||||||||||| || ||||| Sbjct 204 NNNNNNNNNNNNNNNNNNNNTCTTCAACGAGGAATGCCTAGTAAGCTCGAGTCAT 150 >seq553685 Length=3707 Score = 134 bits (148), Expect = 3e-29 Identities = 161/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||||||||| | | || ||| |||||| ||||||||||| || || Sbjct 234 GCTTCTTAGAGGGACTATGGATGTTTAGACGAACAAAGTTTCAGGCAATAACAAGTATGC 175 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 ||||||||||||||||| || || || | ||| |||||| | |||||||| || Sbjct 174 AATGCCCTTAGATGTTCTTGGTCGTACACATGCTTCACTGATGTATTCAACGAGTACAAA 115 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 |||||| | | ||||||||||| |||| | | || | ||||| || |||| Sbjct 114 GCCTTGGGAAACAATCCCGGGTAATCTTGGTAAATTTCTTTTTGATTGGGATGGATCATT 55 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTA-GTAA 284 |||||| ||| |||||||||||||||| ||| |||| Sbjct 54 GCAATTGTTGGTCTTCAACGAGGAATGTCTATGTAA 19 >seq1997 Length=10190 Score = 129 bits (142), Expect = 1e-27 Identities = 138/180 (77%), Gaps = 7/180 (4%) Strand=Plus/Minus Query 105 AAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTA 164 ||||||||||||| ||| ||||| ||||||||||||||||||||||| ||||| ||||| Sbjct 8274 AAGTTTGAGGCAACAACGGGTCTACGATGCCCTTAGATGTTCTGGGCCACACGCACGCTA 8215 Query 165 CACTGACAGAGCCAACGAGTTCATCA-CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAA 223 || | | | |||||||| | | || ||||| | | ||||||||| | || Sbjct 8214 CATTAATATGTTCAACGAGTATGTAAGCCATGGCC-----GCCCGGGTAATCTCGGATAA 8160 Query 224 CTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTA 283 | || || ||||| || |||||||| ||||| ||||||||||||||||||||||| Sbjct 8159 TTTCATCATG-ACGGGATGGATCATTGCAACTATTGGTCTTCAACGAGGAATGCCTAGTA 8101 >seq46444 Length=5579 Score = 113 bits (124), Expect = 8e-23 Identities = 117/152 (77%), Gaps = 5/152 (3%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 ||||||| |||||| ||||| | || ||| |||||||||||||||||||| |||||| Sbjct 5048 GCTTCTTGGAGGGAATATCGTCGGTTAGGCGACGGAAGTTTGAGGCAATAACAAGTCTGT 4989 Query 130 ----GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185 |||||| |||||||||||||||||| | |||||||||| || | | |||| ||| Sbjct 4988 CTGTGATGCCATTAGATGTTCTGGGCCGCTCACGCGCTACACCGATATATTCAACTAGTA 4929 Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTT 217 || || ||| ||| | |||||||||| Sbjct 4928 TATAGTCTCGGCGTATAGGCCCGGGTAATCTT 4897 >seq548166 Length=3957 Score = 107 bits (118), Expect = 4e-21 Identities = 133/183 (73%), Gaps = 8/183 (4%) Strand=Plus/Minus Query 154 CACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAA 213 ||||||| ||| |||| | |||||||| || |||| || | ||| | | |||| Sbjct 3257 CACGCGCACTATGCTGATGTATTCAACGAGTATATAGCCTTAGCTGACAGGGCCGAGTAA 3198 Query 214 TCTTGTTAAACTCTGTCGTGCTGGGG--------ATAGAGCATTGCAATTATTGCTCTTC 265 ||||| ||| | ||||| ||||| ||||| |||||||||| || | ||| Sbjct 3197 TCTTGGGAAATTTCATCGTGATGGGGTCATGGGGATAGATCATTGCAATTGTTCGTTTTC 3138 Query 266 AACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTT 325 |||||||||||||||||||||| | ||||||| | ||||| ||||||| | ||||| Sbjct 3137 AACGAGGAATGCCTAGTAAGCGTGAGTCATCAATTCACGTTGGCAACGTCCCCGTCCTTT 3078 Query 326 GTA 328 ||| Sbjct 3077 GTA 3075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 932218071296