Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq891949 141 3e-31 seq1165057 136 1e-29 seq200337 129 2e-27 seq1455861 122 3e-25 seq143573 122 3e-25 seq942928 120 1e-24 seq750377 118 4e-24 seq648238 113 1e-22 seq903449 109 2e-21 seq70103 105 2e-20 seq1186880 82.4 3e-13 seq539670 82.4 3e-13 seq186689 80.6 9e-13 seq48962 80.6 9e-13 >seq891949 Length=448 Score = 141 bits (156), Expect = 3e-31 Identities = 313/459 (68%), Gaps = 29/459 (6%) Strand=Plus/Plus Query 36 ACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAG-GTGCGGTAACACGCCCTGGAG 94 |||||||||| | |||||| ||||| |||| ||||| | || ||||| ||| ||||| Sbjct 1 ACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGAG 60 Query 95 GTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTA 154 | |||||||||| |||| | ||||| |||||||| ||||| ||||||||||| | | Sbjct 61 GACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCCAGGGGTGAAAGACCA 120 Query 155 AACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTT-AG-GTAGTGCCTCAAGT-- 210 | ||| | ||| |||||| ||| || ||||| |||||| || ||||| | | || Sbjct 121 ACCAAGATCGGATATAGCTAGTTTTCCGCGAAATCTATTTCAGTATAGTGTATGATGTCG 180 Query 211 ATCACCATCGGGGGTAGAGCACTGTTATGGCTAGGGGG----TCATTGCGACTTACCAAA 266 | | | | ||||||||||| |||||||| | |||| || ||| ||| Sbjct 181 GTGGC---CCGAGGTAGAGCACTCAGTGGGCTAGGGTGGCCCCCATTTCGCTTTAGCAAC 237 Query 267 CCATTGCAAACTCCGAATGC------GCATCAGTTTTACCGCGGGAGTGAGGGCATGGGT 320 || | ||||| ||||| | |||| | ||| | || ||| ||||| Sbjct 238 CCCAGGGAAACTACGAATACATGTCGTCATCCTTAGTACAGACAGACTGA----TTGGGT 293 Query 321 GCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGAC 380 |||||| ||| |||||||| || | || | | | ||||| ||| || | Sbjct 294 GCTAAGATCCAAAGCCGAGAGGGAAATAGCCCAAATCGTACGGTAAGGTCCCTAAGCAAT 353 Query 381 AGCTAAGTTAAACTAACGAAGTCTGAT--TGCTAAGACAGCTAGGATGTTGGCTTGGAAG 438 || ||| || || |||| |||| || | |||| | |||| || |||||||||| Sbjct 354 CACTTAGTGGAA--AAGGAAG--TGATCGAGCGATGACAACCAGGAGGTGGGCTTGGAAG 409 Query 439 CAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTC 477 |||||| || ||| |||| |||||| |||||||| ||| Sbjct 410 CAGCCA-TCCTTTGAAGAAAGCGTAATAGCTCACTGGTC 447 >seq1165057 Length=450 Score = 136 bits (150), Expect = 1e-29 Identities = 133/170 (78%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAG-GTGCGGTAACACGCCCTGGA 93 ||||||||||| | |||||| ||||| |||| ||||| | || ||||| |||||||| Sbjct 144 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCCTGGA 203 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 || |||||||||| |||| |||||| ||| |||| | ||| |||||||||||||| Sbjct 204 GGACCGAACCCACGTATGTGGAAAAAAACGGGAATGACTTATGGCTAGGGGTGAAAGGCC 263 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGC 203 || ||| | ||| |||||||||| || ||||| |||||| |||| || Sbjct 264 AACCAAGATCGGATATAGCTGGTTTTCCGCGAAATCTATTTCAGTAGAGC 313 >seq200337 Length=971 Score = 129 bits (142), Expect = 2e-27 Identities = 283/414 (68%), Gaps = 22/414 (5%) Strand=Plus/Plus Query 80 TAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGT 139 ||||| ||| |||||| |||||||||| |||| | ||||| ||||||| ||||| | Sbjct 3 TAACAGGCCTTGGAGGACCGAACCCACGTATGTGGCAAAATNNNGGGATGACTTGTGGCT 62 Query 140 AGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTA 199 ||||||||||||| || ||| | ||| |||||||||| | ||||| ||||| ||| Sbjct 63 AGGGGTGAAAGGCCAACCAAGATCGGATATAGCTGGTTTTTCACGAAATCTATTCCAGTA 122 Query 200 GTGCCTCAAGTATCACCAT---CGGGGGTAGAGCACTGTTATGGCTAGGGGG----TCAT 252 | || | | || | || | | ||||||||||| |||||||| | ||| Sbjct 123 GAGCGT--ATGATGTCGATGGCCCGAGGTAGAGCACTCAATGGGCTAGGGTGCCCCCCAT 180 Query 253 TGCGACTTACCAAACCATTGCAAACTCCGAAT---GCGCATCAGTTTTACCGCGGGAGTG 309 | || |||| || || | |||||| |||| | ||||| ||| | || | Sbjct 181 TTCGCTTTACTAACCCCAAGGAAACTCTGAATACAGGTCATCATCCTTAGTAC-AGACAG 239 Query 310 AGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCC-GGACTATCAGCTAAGG 368 | | ||||||||||| ||| ||||| ||||| | || || | ||||||| Sbjct 240 ACTGATTGGGTGCTAAGATCCAAAGTCGAGA-GAGAAATAGCCTAGATCGTATGCTAAGG 298 Query 369 CCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGAT--TGCTAAGACAGCTAGGATG 426 ||| || | || ||| || || |||| |||| || | |||| |||||| | Sbjct 299 TCCCTAAGCAATCACTTAGTGGAA--AAGGAAG--TGATCGAGCGATGACAACTAGGAGG 354 Query 427 TTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480 | | ||||||||||||| || ||| |||| |||||| |||||||||||| || Sbjct 355 TGGAATTGGAAGCAGCCA-TCCTTTGAAGAAAGCGTAATAGCTCACTAGTCTAG 407 >seq1455861 Length=304 Score = 122 bits (134), Expect = 3e-25 Identities = 183/254 (72%), Gaps = 6/254 (2%) Strand=Plus/Minus Query 306 AGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTA 365 |||||| ||||| | |||| | | | ||||||| || | ||||| | |||||| Sbjct 286 AGTGAGACGATGGGGGATAAGCTTCATCGTCGAGAGGGAAACAGCCCGGATCACCAGCTA 227 Query 366 AGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGAT 425 ||||||| ||||||| ||| ||| | | || || || | ||| |||||||| |||| Sbjct 226 AGGCCCCTAAATGACCGCTCAGTGATA--AAGGAGGTGGGGCTGCAAAGACAGCCAGGAG 169 Query 426 GTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAGGAGTC 485 ||| || | |||||||||| | |||||||||||||||| |||||||| | ||| | Sbjct 168 GTTTGCCTAGAAGCAGCCA-CCCTTTAAAGAGTGCGTAATAGCTCACTGATAGAGCGCCC 110 Query 486 GGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTGGGATCATTTATATG- 544 ||| || || | |||| |||| ||| ||||||| ||||||| | | ||| Sbjct 109 TTGCGCTGAAGATGAACGGG-GCTAAGCGATCTGCCGAAGCTGTGGGAT-GTCAAAATGC 52 Query 545 ATCGGTAGGGGAGC 558 |||||||||||||| Sbjct 51 ATCGGTAGGGGAGC 38 >seq143573 Length=1214 Score = 122 bits (134), Expect = 3e-25 Identities = 281/416 (68%), Gaps = 27/416 (6%) Strand=Plus/Plus Query 80 TAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGT 139 ||||| ||| |||||| |||||||||| |||| | ||||| |||||||| ||||| | Sbjct 3 TAACAGGCCTTGGAGGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCT 62 Query 140 AGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTA 199 ||||||||||||| || ||| | ||| |||| ||||| || |||| || ||| ||| Sbjct 63 AGGGGTGAAAGGCCAACCAAGATCGGATATAGTTGGTTTTCCGTGAAATCTTTTTCAGTA 122 Query 200 GTGCCTCAAGTATCACCAT---CGGGGGTAGAGCACTGTTATGGCTAGGGGG----TCAT 252 | || | | || | || | | ||||||||||| |||||||| | ||| Sbjct 123 GAGCAT--ATGATGTCGATGGCCCGAGGTAGAGCACTCAATGGGCTAGGGTGGCCCCCAT 180 Query 253 TGCGACTTACCAAACCATTGCAAACTCCGAATGC------GCATCAGTTTTACCGCGGGA 306 | || ||||||| || | |||||| |||| | |||| | ||| | || Sbjct 181 TTCGCTTTACCAACCCCAGGGAAACTCTGAATACAGGCCGCCATCCTTACTACAGACAGA 240 Query 307 GTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAA 366 ||| |||| |||||| ||| ||||| | ||| | || || || ||||| Sbjct 241 CTGA----TTGGGCGCTAAGATCCAAAGTCGAGACG-GAACAGCCCAGAACATACGCTAA 295 Query 367 GGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGAT--TGCTAAGACAGCTAGGA 424 || ||| || | || ||| || || |||| |||| | | |||| | ||| Sbjct 296 GGTCCCTAAGCAATCACTTAGTGGAA--AAGGAAG--TGATCCAACGATGACAACCAGGT 351 Query 425 TGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480 || |||||||||||||||| || ||| |||| |||||| |||||||| ||| || Sbjct 352 GGTGGGCTTGGAAGCAGCCA-TCCTTTGAAGAAAGCGTAATAGCTCACTGGTCTAG 406 >seq942928 Length=305 Score = 120 bits (132), Expect = 1e-24 Identities = 155/212 (73%), Gaps = 9/212 (4%) Strand=Plus/Minus Query 80 TAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGT 139 ||||| ||| |||||| |||||||||| |||| | ||||| |||||||| ||||| | Sbjct 303 TAACAGGCCTTGGAGGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCT 244 Query 140 AGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTA 199 ||||||||||||| || ||| | ||| |||||||||| || ||||| |||||| ||| Sbjct 243 AGGGGTGAAAGGCCAACCAAGATCGGATATAGCTGGTTTTCAGCGAAATCTATTTCAGTA 184 Query 200 GTGCCTCAAGTATCACCAT---CGGGGGTAGAGCACTGTTATGGCTAGGGGG----TCAT 252 | || | | || | || | | ||||||||||| |||||||| | ||| Sbjct 183 GAGCAT--ATGATGTCGATAGCCCGAGGTAGAGCACTCAATGGGCTAGGGTGGCCCCCAT 126 Query 253 TGCGACTTACCAAACCATTGCAAACTCCGAAT 284 | || ||||||| || | ||||||||||| Sbjct 125 TTCGCTTTACCAACCCCAGGGAAACTCCGAAT 94 >seq750377 Length=417 Score = 118 bits (130), Expect = 4e-24 Identities = 126/165 (76%), Gaps = 1/165 (1%) Strand=Plus/Plus Query 40 GAAACCAAGTGATCTACCCATGGCCAGGATGAAG-GTGCGGTAACACGCCCTGGAGGTCC 98 |||||| | |||||| ||||| |||| ||||| | || ||||| ||| |||||| || Sbjct 1 GAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGAGGACC 60 Query 99 GAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACA 158 |||||||| |||| | ||||| |||||||| ||||| ||||||||||| | | || Sbjct 61 GAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAATGGCATCCA 120 Query 159 AACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGC 203 | | ||| |||||||||| || |||| ||||||| |||| || Sbjct 121 AGATCGGATATAGCTGGTTTTCCGTGAAATCTATTTAAGTAGAGC 165 >seq648238 Length=1086 Score = 113 bits (124), Expect = 1e-22 Identities = 111/142 (78%), Gaps = 1/142 (1%) Strand=Plus/Plus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAG-GTGCGGTAACACGCCCTGGA 93 ||||||||||| | |||||| | ||| | || ||||| | || ||||| ||| |||| Sbjct 945 GACCCGAAACCGATCGATCTAGCTATGAGCTGGTTGAAGAGAGCTCTAACAGGCCTTGGA 1004 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 || |||||||||| |||| | ||||| |||||||| ||||| |||||||||||||| Sbjct 1005 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 1064 Query 154 AAACAAACTTGGAAATAGCTGG 175 || ||| | ||| |||||||| Sbjct 1065 AACCAAGATCGGATATAGCTGG 1086 >seq903449 Length=596 Score = 109 bits (120), Expect = 2e-21 Identities = 110/142 (77%), Gaps = 1/142 (1%) Strand=Plus/Plus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAG-GTGCGGTAACACGCCCTGGA 93 |||| ||||| | |||||| ||||| || | ||||| | || ||||| ||| |||| Sbjct 455 GACCTAAAACCGATCGATCTAGCCATGAGCATGTTGAAGAGAGCTCTAACAGGCCTTGGA 514 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 || |||||||||| |||| | ||||| |||||||| ||||| |||||||||||||| Sbjct 515 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 574 Query 154 AAACAAACTTGGAAATAGCTGG 175 || ||| | ||| |||||||| Sbjct 575 AACCAAGATCGGATATAGCTGG 596 >seq70103 Length=4021 Score = 105 bits (116), Expect = 2e-20 Identities = 143/198 (72%), Gaps = 1/198 (1%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| || | ||||| ||| ||| | | |||||||| | ||||||||| ||||| Sbjct 1393 CGAGTCTTAATATGGCGATTGTCACTGCTTATGGACCCGAACCTGAGTGATCTATCCATG 1452 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 ||||||||||| | | | | || |||||||||||| || |||||||| ||| Sbjct 1453 ACCAGGATGAAGCTTGGATGAAACTAAGCAGAGGTCCGAACCGGCTGATGTTGAAGAATC 1512 Query 122 AGGGGATGAGCTGTGG-GTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTC 180 || ||||||| ||||| | ||||||||| || | | ||| | || || ||||||||| Sbjct 1513 AGCGGATGAGTTGTGGTTTTGGGGTGAAATGCCACTCCAACCTAGAGCTAACTGGTTCTC 1572 Query 181 TCCGAAAACTATTTAGGT 198 |||| ||| |||| Sbjct 1573 CTAGAAATGCATTGAGGT 1590 >seq1186880 Length=321 Score = 82.4 bits (90), Expect = 3e-13 Identities = 77/97 (79%), Gaps = 1/97 (1%) Strand=Plus/Minus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAG-GTGCGGTAACACGCCCTGGA 93 ||||||||||| | |||||| ||||| |||| ||||| | || ||||| ||| |||| Sbjct 100 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 41 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGA 130 || |||||||||| |||| | ||||| |||||||| Sbjct 40 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGA 4 >seq539670 Length=8650 Score = 82.4 bits (90), Expect = 3e-13 Identities = 115/160 (72%), Gaps = 1/160 (1%) Strand=Plus/Plus Query 36 ACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAG-GTGCGGTAACACGCCCTGGAG 94 |||| ||| | | |||||| ||||| ||| ||||| | || |||| ||| ||||| Sbjct 2332 ACCCAAAAGCGATCGATCTAGCCATGAGCAGATTGAAGTGAGCTCTAACTGGCCTTGGAG 2391 Query 95 GTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTA 154 | ||||| ||| |||| | |||| || ||||| ||| | |||||||||||||| | Sbjct 2392 GACCGAATCCATGTATGTGGCCAAATATGGTGATGACTTGTCGCTAGGGGTGAAAGGCCA 2451 Query 155 AACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTT 194 | ||| | ||| ||| |||||| | | ||| |||||| Sbjct 2452 ACCAAGATCGGATATAACTGGTTTTTCACTAAATCTATTT 2491 >seq186689 Length=5357 Score = 80.6 bits (88), Expect = 9e-13 Identities = 106/146 (73%), Gaps = 1/146 (1%) Strand=Plus/Minus Query 50 GATCTACCCATGGCCAGGATGAAG-GTGCGGTAACACGCCCTGGAGGTCCGAACCCACTA 108 |||||| ||||| |||| ||||| | || ||||| || | |||| |||||||| Sbjct 395 GATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGACCTTCGAGGAATGAACCCACGT 336 Query 109 ATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAA 168 |||| | ||||| ||||||| ||||| |||||||||||||| | ||| | | | Sbjct 335 ATGTGGCAAAATCCGGGGATGTCTTGTGGCTAGGGGTGAAAGGCCAGCCAAGATCGAGCA 276 Query 169 TAGCTGGTTCTCTCCGAAAACTATTT 194 ||||| ||| | ||||| |||||| Sbjct 275 TAGCTAGTTTTTCGCGAAACCTATTT 250 >seq48962 Length=14858 Score = 80.6 bits (88), Expect = 9e-13 Identities = 111/148 (75%), Gaps = 7/148 (5%) Strand=Plus/Plus Query 412 AAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCA 471 |||||||| | || ||| || | |||||||||| | ||||||||||| |||| |||||| Sbjct 973 AAGACAGCCATGAGGTTTGCCTAGAAGCAGCCACCC-TTTAAAGAGTGAGTAATAGCTCA 1031 Query 472 CTAGTCGAGGAGTCG-GGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTG 530 ||| |||| | |||| || | || || || ||| |||| || | ||||||| || Sbjct 1032 CTAATCGA-GCGTCGTTGCATTGAAGATGATTGGG--ATAAGCGGTGTGCCGAAGCGGTA 1088 Query 531 GGATCATTTATATG-ATCGGTAGGGGAG 557 |||| || ||||| ||| ||||| ||| Sbjct 1089 GGAT-GTTAATATGCATCAGTAGGAGAG 1115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1662875478528