Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq39715 102 1e-19 seq1507422 86.0 1e-14 seq1488139 86.0 1e-14 seq349996 84.2 4e-14 seq151250 75.2 2e-11 >seq39715 Length=10397 Score = 102 bits (112), Expect = 1e-19 Identities = 91/113 (81%), Gaps = 1/113 (1%) Strand=Plus/Plus Query 133 TGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGC 191 ||| |||||||| ||| | | |||| || ||| ||||||||||||||||| |||||| Sbjct 8267 TGCCTGCTGAATCCATGAGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGTAGC 8326 Query 192 TGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGA 244 |||||||||||| ||| | |||||| ||||| |||||||||||||||| Sbjct 8327 CACAGGAAAAGAAAGCAAAAGTGATTCCTGTAGTAGCGGCGAGCGAAATGGGA 8379 >seq1507422 Length=3122 Score = 86.0 bits (94), Expect = 1e-14 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 170 CGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTG 229 ||||||||||||||| |||||| ||||||||||| ||| | ||||||| ||||| | Sbjct 114 CGAACTGAAACATCTTAGTAGCAAGAGGAAAAGAAAGCAAAAGCGATTCCCTTAGTAGCG 55 Query 230 GCGAGCGAAATGGGATGAGCCT 251 ||||| |||||||| | ||||| Sbjct 54 GCGAGTGAAATGGGGTCAGCCT 33 >seq1488139 Length=9054 Score = 86.0 bits (94), Expect = 1e-14 Identities = 91/119 (76%), Gaps = 1/119 (1%) Strand=Plus/Minus Query 133 TGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGC 191 ||| |||||| | ||| | | |||| || ||| ||||||||||||||||| |||||| Sbjct 5100 TGCCTGCTGAGTCCATGTGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGTAGC 5041 Query 192 TGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCC 250 ||||||||||| ||| |||||| ||||| |||||||||||||| | |||| Sbjct 5040 CAGAGGAAAAGAAAGCAAAATTAATTCCCGTAGTAGCGGCGAGCGAAATGGAACCAGCC 4982 >seq349996 Length=1891 Score = 84.2 bits (92), Expect = 4e-14 Identities = 87/113 (77%), Gaps = 1/113 (1%) Strand=Plus/Minus Query 133 TGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGC 191 ||| |||||||| || | | |||| || ||| ||||||||||||||||| || ||| Sbjct 1226 TGCCTGCTGAATCCAAGAGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGCAGC 1167 Query 192 TGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGA 244 ||||||||||| ||| | ||||||| ||||| ||| ||| |||||||| Sbjct 1166 AAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCAAGCAAAATGGGA 1114 >seq151250 Length=1736 Score = 75.2 bits (82), Expect = 2e-11 Identities = 67/84 (80%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 168 GGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAG 227 |||||||||||| |||| |||||| ||||||||||| ||| | |||| | ||||| Sbjct 1011 GGCGAACTGAAAAATCTTAGTAGCCAGAGGAAAAGAAAGCAAAAGTGATTTTCGTAGTAG 1070 Query 228 TGGCGAGCGAAATGGGATGAGCCT 251 ||||||| |||||||| ||||| Sbjct 1071 CGGCGAGCAAAATGGGAGCAGCCT 1094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903873602912