Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq421987 374 3e-101 seq251864 347 4e-93 seq396142 188 2e-45 seq541624 163 9e-38 seq569851 152 2e-34 seq630638 107 6e-21 >seq421987 Length=338 Score = 374 bits (414), Expect = 3e-101 Identities = 288/340 (85%), Gaps = 8/340 (2%) Strand=Plus/Minus Query 104 TGACAATGTCATCAACCCGGATCGGCCCGCGAAG----GACCTTAACGCCAGAAAATGGT 159 |||||||||| || |||||||||||||| ||| | |||| |||| || || Sbjct 338 TGACAATGTCTTCCGCCCGGATCGGCCCGGTAAGACCGGGCCTTGGAGCCAAAAGGAGG- 280 Query 160 CGGTGAAGACCAG-TTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATT 218 || | | || | ||||| || || ||||||||| |||| ||||||||||| Sbjct 279 -GGACATGCCCCGCTTCCGACCCACGGAATAAGTAAAATAACGNNNNNAGTAGTGGTATT 221 Query 219 TCACTTGCGCCGAA-ACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTC 277 ||||||||||| | | ||||||||||||| | |||||||||||||||||||||||||| Sbjct 220 TCACTTGCGCCCATGAGGGCTCCCACTTATCCCACACCTCTCAAGTCATTTCACAAAGTT 161 Query 278 GGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCC 337 |||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 160 GGACTAGATTCAAGCTCAATAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCAAGTTCCC 101 Query 338 TTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCAT 397 ||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||| Sbjct 100 TTGGCTGTGGTTTCGCTGGNTAGTAGACAGGGACAGTGGGAATCTCGTTAATCCATTCAT 41 Query 398 GCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTA 437 |||||||||||||||||||||||||||||||||||||||| Sbjct 40 GCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTA 1 >seq251864 Length=1131 Score = 347 bits (384), Expect = 4e-93 Identities = 235/262 (90%), Gaps = 1/262 (0%) Strand=Plus/Plus Query 185 GATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAA-ACGGCTCCCAC 243 || || |||||| |||| ||| |||||||||||||||||||||| | ||||||||| Sbjct 870 GAATACGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTGCGCCCTTGAGGGCTCCCAC 929 Query 244 TTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTC 303 |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct 930 TTATCCTACACCTCTCATGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGCC 989 Query 304 TTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAG 363 |||||||||| ||||||||||||||| || |||||||||||||||||||| |||||||| Sbjct 990 TTCTTTCCCCACTGATTCCGCCAAGCATGTCCCCTTGGCTGTGGTTTCGCTGGATAGTAG 1049 Query 364 ATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 423 | | |||||||||||||||||||||||||||| | ||| || ||||||||||||| |||| Sbjct 1050 ACATGGACAGTGGGAATCTCGTTAATCCATTCCTACGCATCGCTAATTAGATGACAAGGC 1109 Query 424 ATTTGGCTACCTTAAGAGAGTC 445 ||||||| |||||||||||||| Sbjct 1110 ATTTGGCAACCTTAAGAGAGTC 1131 >seq396142 Length=366 Score = 188 bits (208), Expect = 2e-45 Identities = 231/327 (71%), Gaps = 33/327 (10%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 325 CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 266 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||| |||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 265 TTTTAATAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATC 206 Query 127 GGCCCGCGAA----GGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAG-TTCCGCTTC 181 |||||| || || |||| ||| |||| | || | | || | || || | Sbjct 205 GGCCCGGTAAGACCGGGCCTTGGAGCC--AAAAGGAGGGGACATGCCCCGCTTTCGACCC 148 Query 182 ATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-------------- 227 | || ||||||||| ||| |||||||||||||||| Sbjct 147 ACGGAATAAGTAAAATAACNNNNNNNNNNNTGGTATTTCACTTGCGCCCGTAAGGGCTNN 88 Query 228 ------------CCGAAACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAG 275 ||| || ||||||||||||| ||| ||||||||||||| Sbjct 87 NNNNNNNNNCGCCCGTAAGGGCTCCCACTTATCCTANNNNNNNNNNNTCATTTCACAAAG 28 Query 276 TCGGACTAGAGTCAAGCTCAACAGGGT 302 ||||||||||||||||||||||||||| Sbjct 27 TCGGACTAGAGTCAAGCTCAACAGGGT 1 >seq541624 Length=10405 Score = 163 bits (180), Expect = 9e-38 Identities = 208/281 (74%), Gaps = 13/281 (5%) Strand=Plus/Minus Query 24 ATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAACAGATGTGCCG 83 |||| |||| || |||| | ||||| |||| || ||||| ||||||||||||| || Sbjct 806 ATTTGTGTTTTCGTTGAGCTCATCTTAGAACACTTGTGTTATCTTTTAACAGATGTGTCG 747 Query 84 CCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCGGCCCGCGAA----GGA 139 |||||||||||||| ||||||||||||| || |||| ||| ||| || || Sbjct 746 TCCCAGCCAAACTCC--ACCTGACAATGTCTTCCGCCCGAATCAGCCAAGTAAAACCGGG 689 Query 140 CCTTAACGCCAGAAAATGGTCGGTGAAGACCAG-TTCCGCTTCATTGATTAAGTaaaaaa 198 |||| || | || || || | | || | |||| || | ||||||||| | Sbjct 688 CCTTGGAGCTAAAACGAGG--GGACATGCCCCGCTTCCAACCCACATAATAAGTAAAACA 631 Query 199 aCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTACACCTCT 258 ||| |||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct 630 T---TAAAAGTAGTGGTATTTCACTTGCGCCCTTGGGGCTCCCACTTATTTTACACCTCT 574 Query 259 CAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCT-CAACA 298 ||| |||||||| ||| ||||||||||||||||| ||||| Sbjct 573 CAAATCATTTCATGAAGGCGGACTAGAGTCAAGCTGCAACA 533 >seq569851 Length=4925 Score = 152 bits (168), Expect = 2e-34 Identities = 120/144 (83%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 392 ATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTT 451 ||| |||| | |||| |||||||||||||||||||| |||| | | ||||| |||||| Sbjct 2971 ATTTATGCATGGCACTGATTAGATGACGAGGCATTTGACTACTCTGAAAGAGTTATAGTT 2912 Query 452 ACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGG 511 || || |||||||| ||| |||||| ||||||||||||||||||| ||||||||| | Sbjct 2911 ACATCCACCGTTTACACGCATTTGGTTTAATTTCTTCACTTTGACATCCAGAGCACTAGA 2852 Query 512 CAGAAATCACATTGCGTCAACATC 535 ||||| ||||||||||| | |||| Sbjct 2851 CAGAAGTCACATTGCGTGAGCATC 2828 Score = 147 bits (162), Expect = 7e-33 Identities = 120/146 (82%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 389 TCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATA 448 |||||| |||| | |||||||||||||||| | ||||||| || ||| ||||||||||| Sbjct 273 TCCATTTATGCACATCACTAATTAGATGACAATGCATTTGACTGCCTGGAGAGAGTCATA 214 Query 449 GTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACT 508 |||||||| || |||| || | |||||| ||||||||||||| ||||| |||||||| Sbjct 213 ATTACTCCCACCATTTATACGTGTTTGGTTTAATTTCTTCACTTGTACATTTAGAGCACT 154 Query 509 GGGCAGAAATCACATTGCGTCAACAT 534 | || ||||||||||| || | ||| Sbjct 153 AGACAAAAATCACATTGTGTTAGCAT 128 >seq630638 Length=1757 Score = 107 bits (118), Expect = 6e-21 Identities = 75/84 (89%), Gaps = 1/84 (1%) Strand=Plus/Plus Query 294 CAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGC 353 ||| ||||||||||||| | |||||||||||||| ||||| |||||| ||||||||||| Sbjct 1437 CAATAGGGTCTTCTTTCTTC-CTGATTCCGCCAAGTCCGTTTCCTTGGGTGTGGTTTCGC 1495 Query 354 TAGATAGTAGATAGGGACAGTGGG 377 | ||||||||| |||||||||||| Sbjct 1496 TGGATAGTAGACAGGGACAGTGGG 1519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1609335927136