Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq212262 93.3 7e-17 seq338512 78.8 2e-12 seq547410 73.4 6e-11 >seq212262 Length=4000 Score = 93.3 bits (102), Expect = 7e-17 Identities = 75/91 (82%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 31 TTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGG 90 ||||| | ||| || ||| || ||||| |||||||||||||| ||||||||||| Sbjct 216 TTGGTCATCGCGCTTGGTTGAAAAGCCAGTGGCGCGAAGCTACCATGTGCTGGATTATAA 157 Query 91 CTGAACGCCTCTAAGTCAGAATCCATGCCAG 121 ||||||||||||||||||||||||| || || Sbjct 156 CTGAACGCCTCTAAGTCAGAATCCAAGCTAG 126 >seq338512 Length=376 Score = 78.8 bits (86), Expect = 2e-12 Identities = 58/68 (85%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 54 AGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 || ||||| |||||||||||| | | |||||||| ||||||||||||||||||||||| Sbjct 23 AGCCAGTGGCGCGAAGCTACCGTGTATCGGATTATGACTGAACGCCTCTAAGTCAGAATC 82 Query 114 CATGCCAG 121 || || || Sbjct 83 CAAGCTAG 90 >seq547410 Length=3216 Score = 73.4 bits (80), Expect = 6e-11 Identities = 52/60 (87%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 62 CCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAG 121 |||| |||||||| | || ||||||||| |||||||||| |||||||||||||| || || Sbjct 2899 CCGCAAAGCTACCGTGTGTTGGATTATGACTGAACGCCTTTAAGTCAGAATCCAAGCTAG 2958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 806647573248