Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq1067122 392 1e-106 seq461211 269 8e-70 seq47472 152 2e-34 seq527540 138 3e-30 seq1496628 93.3 1e-16 seq560071 84.2 7e-14 seq557226 84.2 7e-14 >seq1067122 Length=375 Score = 392 bits (434), Expect = 1e-106 Identities = 307/362 (85%), Gaps = 6/362 (2%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| | || | |||| |||| |||||||||||||||||| Sbjct 360 GTACTCATTCCAATTACCAGACACTAATGCGCCCGGTATTGTTATTTATTGTCACTACCT 301 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 300 CCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCTTTCCTTGGATGTGGTAGCCGTT 241 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||| | ||||||||||||||||| |||| |||||| ||||||||| Sbjct 240 TCTCAGGCTCCCTCTTCAGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATGGTA 181 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| ||||||||| || ||||||||||||||||||||||||||||| | |||||||| Sbjct 180 GGCCCCTATCCTACAATTGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCGCCGGCA 121 Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGA--AGGGCGTT 297 | ||| || |||||| ||| |||||| |||||||| | ||| | ||| || || | Sbjct 120 CGAAGTCCGTGCGATCCGTCGAGTTATCATGAATCATC--GGATCAGCGAGCAGAGCCTC 63 Query 298 GGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCT 356 | ||||||||||||||| ||||| || ||||||||||||| | ||| ||||||||| Sbjct 62 AGCCTTTTATCTAATAAATGTGCCCCTCCCAGAAGTCGGGGTTTGTTGCACGTATTAGCT 3 Query 357 CT 358 || Sbjct 2 CT 1 >seq461211 Length=310 Score = 269 bits (298), Expect = 8e-70 Identities = 250/311 (80%), Gaps = 11/311 (4%) Strand=Plus/Plus Query 149 CTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGAT 208 ||||||| |||| |||||| ||||||||||||| ||||||||||||||||||||||| Sbjct 1 CTAATTCTCCGTCACCCGTCACCACCATGGTAGGCCCCTATCCTACCATCGAAAGTTGAT 60 Query 209 AGGGCAGAAATTTGAATGAACCATCGCCGGCTC-AAGGCCATGCGATTCGTTAAGTTATT 267 ||||||||||||||||||| |||| ||||| | |||||| |||||| ||| |||||| Sbjct 61 AGGGCAGAAATTTGAATGATGCATCACCGGCACGAAGGCCGTGCGATCCGTCGAGTTATC 120 Query 268 ATGAATCACCAAGGAGCCCCGA--AGGGC----GTTGGTTTTTTATCTAATAAATACACC 321 |||||||| | ||| | ||| || || || | ||||||||||||||| || Sbjct 121 ATGAATCATC--GGATCAGCGAGCAGAGCCCTTGTCAGCCTTTTATCTAATAAATGTGCC 178 Query 322 CCTTC-CGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATG 380 ||| | ||||||||||||| | ||| |||||||||||||||||| || |||||| | Sbjct 179 CCTCCGTGAAGTCGGGGTTTGTTGCACATATTAGCTCTAGAATTACTACTATTATCCGAG 238 Query 381 TAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGT 440 ||| |||| |||||| |||| ||||||||||||||||||||||||||||||||| || Sbjct 239 TAG-CTCGTACCATCAAACAAACTATAACTGATTTAATGAGCCATTCGCAGTTTCACAGT 297 Query 441 ATAGATTGCTT 451 | |||| || Sbjct 298 TCAAATTGGTT 308 >seq47472 Length=5795 Score = 152 bits (168), Expect = 2e-34 Identities = 187/248 (75%), Gaps = 13/248 (5%) Strand=Plus/Plus Query 172 ACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCA 231 ||| ||||||||| |||| |||||||||||||||||||| ||||||||||||||| || Sbjct 1608 ACCGTGGTAGGCCCTTATCTTACCATCGAAAGTTGATAGG-CAGAAATTTGAATGATGCA 1666 Query 232 TCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCA----AG-GAGCCC 286 | || ||| | | | | | || ||| ||||||| ||||||| || || |||| Sbjct 1667 TTGCTGGCACGAAGTCGCACAATCCGTCAAGTTATCTTGAATCATCAGATCAGTGAGC-- 1724 Query 287 CGAAGGGC--GTTGGTTTTTTATCTAATAAATACACCCCTTCCG-AAGTCGGGGTTTTTA 343 | || | || |||||||| |||||| | |||| | | ||||||| |||| | Sbjct 1725 -GGAGCCCATGTCAACCTTTTATCTGATAAATGTAGCCCTCCTGGAAGTCGGAGTTTGTT 1783 Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAAC 403 ||| ||||||||||||||||||| |||||||||| |||| | ||| | ||||||||| Sbjct 1784 GCACGTATTAGCTCTAGAATTACTACGGTTATCCGAGTAG-CATATACCAACAAATAAAC 1842 Query 404 GATAACTG 411 ||||||| Sbjct 1843 TATAACTG 1850 >seq527540 Length=300 Score = 138 bits (152), Expect = 3e-30 Identities = 92/101 (91%), Gaps = 1/101 (1%) Strand=Plus/Minus Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTT-ATACTTAGACAT 463 ||||||||||||||||||||||||||||||||| || | |||| || |||||| |||| Sbjct 298 ATAACTGATTTAATGAGCCATTCGCAGTTTCACAGTTCAAATTGGTTCATACTTGCACAT 239 Query 464 GCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||||||| |||| Sbjct 238 GCATGGCTTAATCTTTGAGACAAGCATATGACTACTTGCAG 198 >seq1496628 Length=2120 Score = 93.3 bits (102), Expect = 1e-16 Identities = 82/101 (81%), Gaps = 1/101 (1%) Strand=Plus/Minus Query 348 GTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATA 407 ||||||||||||||||||| | | ||||| |||| | | ||| |||||| |||| ||| Sbjct 1149 GTATTAGCTCTAGAATTACTATGCTTATCTGAGTAGCACG-TACCATCAAACAAACTATA 1091 Query 408 ACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTG 448 || |||||||||||||||| |||| ||||| || | |||| Sbjct 1090 ACGGATTTAATGAGCCATTTGCAGCTTCACAGTTCAAATTG 1050 >seq560071 Length=3243 Score = 84.2 bits (92), Expect = 7e-14 Identities = 70/85 (82%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCC--GAAGTCGGGGTTTTTAGCATGTAT 351 ||| || ||||||||||||||| ||| ||| ||||| ||||||| | ||| |||| Sbjct 1647 CGTCGGCCTTTTATCTAATAAATGTGTCCCCTCCCAGAAGTTGGGGTTTGTTGCACGTAT 1706 Query 352 TAGCTCTAGAATTACCACGGTTATC 376 ||||||||||||||| ||||||||| Sbjct 1707 TAGCTCTAGAATTACTACGGTTATC 1731 >seq557226 Length=3241 Score = 84.2 bits (92), Expect = 7e-14 Identities = 75/93 (81%), Gaps = 1/93 (1%) Strand=Plus/Plus Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTA-TACTTAGACAT 463 ||||||| || ||||||||||||| | |||||| | | |||| || || || | || Sbjct 44 ATAACTGGTTAAATGAGCCATTCGTATTTTCACATTTCAAATTGGTTCGTATTTGCAAAT 103 Query 464 GCATGGCTTAATCTTTGAGACAAGCATATGACT 496 |||||||||||||||||||||| ||||||||| Sbjct 104 TCATGGCTTAATCTTTGAGACAACCATATGACT 136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1486509897472