Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq68655 185 9e-42 seq539347 165 9e-36 seq466961 105 7e-18 seq216476 100 3e-16 seq182135 98.7 1e-15 seq532379 96.9 4e-15 seq40677 89.7 6e-13 seq1484923 87.8 2e-12 >seq68655 Length=5599 Score = 185 bits (204), Expect = 9e-42 Identities = 192/252 (76%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 160136 GGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTTGCATAC 160195 ||||||||||||||||| || || | ||||||||||| ||||| ||||||||| Sbjct 722 GGTCGTGAGTGGGAACTTAATTTCCACATGGGTATGCGTCCTTGGATTGATGTTGCATAT 781 Query 160196 TCTGCTCCAGTCGCTGCTGCTTCTGCTGTATTCCTCGTCTACCCCTTCGGTCAGGGTTCT 160255 || |||| || || ||| || ||||| | ||| | | ||||| | ||| | | Sbjct 782 TCAGCTCATGTTGCAGCTACTACTGCTATTTTCTTGATTTACCCTATTGGTTAAGTAAGC 841 Query 160256 TTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTTGTATTCCAA 160315 || | |||| ||||||| | || |||||||||||||| ||| |||| |||||||||| Sbjct 842 TTTTTTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACATTATGATTGTATTCCAG 901 Query 160316 GCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGT 160375 ||||| ||||| |||||||||||||| ||||||||| | ||| | ||||| |||||||| Sbjct 902 GCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTATAGCTGGTGTATTCGGC 961 Query 160376 GGATCTCTGTTC 160387 || || || ||| Sbjct 962 GGTTCCCTATTC 973 >seq539347 Length=3493 Score = 165 bits (182), Expect = 9e-36 Identities = 141/173 (82%), Gaps = 1/173 (1%) Strand=Plus/Plus Query 160259 TCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTTGTATTCCAAGCA 160318 || |||| ||||||| | || |||||||||||||| |||| |||| |||||||||| ||| Sbjct 1 TCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCA 60 Query 160319 GAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGA 160378 || ||||| |||||||||||||| ||||||||| | ||||| ||| | |||||||| || Sbjct 61 GAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGCT-GTGTATTCGGCGGT 119 Query 160379 TCTCTGTTCTCTGCTATGCATGGATCTCTGGTTACTTCTAGTCTCGTCAGAGA 160431 | || ||| ||||||||||||| || |||| || |||||| | |||| || Sbjct 120 TTCCTATTCACTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGA 172 >seq466961 Length=778 Score = 105 bits (116), Expect = 7e-18 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 162390 GGAGGATCCTGAATTTGAAACCTTCTACACCAAGAATATCCTCTTGAATGAAGGTCTTCG 162449 ||| |||||||||||||| || ||||| ||||| ||||| || || || || ||| |||| Sbjct 778 GGAAGATCCTGAATTTGAGACTTTCTANACCAAAAATATTCTTTTAAACGAGGGTATTCG 719 Query 162450 TGCATGGTTGGCACCAGTTGATCAACCGCATGAGAACTTTGTATTCCCTGAGGAAGTTCT 162509 ||| ||| ||||| | ||||| || ||||| || || |||||||||| || ||||| Sbjct 718 TGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAAGAGGTTCT 659 Query 162510 GCCTAGAGGTAACGCACT 162527 || | || ||||| || Sbjct 658 ACCACGTGGAAACGCTCT 641 >seq216476 Length=3150 Score = 100 bits (110), Expect = 3e-16 Identities = 168/238 (71%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 161842 GGATTCATGCTTCGTCAGTTTGAACTTGCTCG-TCTTATCGGTATCCGTCCTTACAATGC 161900 || |||||| | || || ||||||| || ||| ||| | || | || | ||| ||||| Sbjct 3001 GGTTTCATGTTACGCCAATTTGAACATGATCGATCTATTTAGT-TGCGACTTTATAATGC 2943 Query 161901 TATTGCTTTCTCTGGTCCTATTGCTG-TTTTTGTCAGCGTCTTTCTCATATATCCTCTGG 161959 || | ||||||||||| |||| || ||||||| ||| || || | ||||| |||| Sbjct 2942 AATCCCATTCTCTGGTCCAATTGTTGTTTTTTGTTTCCGTATTCCTTCTTTATCCACTGG 2883 Query 161960 GACAGTCGTCCTGGTTCTTCGCGCCATCGTTTGGGGTTGCCGCTATTTTCAGGTTCTTAC 162019 | || || |||||||| | ||| ||||| || || || || || | ||| | | Sbjct 2882 GGCAATCTGGTTGGTTCTTTGTGCCGAGTTTTGGTGTAGCAGCGATGTTTTGATTCATCC 2823 Query 162020 TTTTCCTACAAGGTTTCCACAATTGGACGCTTAATCCGTTCCACATGATGGGTGTCGC 162077 |||| || | ||| || || ||||||| | | || || || || |||||||| || || Sbjct 2822 TTTT-CTTCTAGGATTTCATAATTGGATGTTGAACCCATTTCATATGATGGGAGTTGC 2766 >seq182135 Length=1057 Score = 98.7 bits (108), Expect = 1e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 162387 AGCGGAGGATCCTGAATTTGAAACCTTCTACACCAAGAATATCCTCTTGAATGAAGGTCT 162446 |||||| |||||||||||||| || ||||| ||||| ||||| || || || || ||| | Sbjct 717 AGCGGAAGATCCTGAATTTGAGACTTTCTANACCAAAAATATTCTTTTAAACGAGGGTAT 776 Query 162447 TCGTGCATGGTTGGCACCAGTTGATCAACCGCATGAGAACTTTGTATTCCCTGAGGAAGT 162506 |||||| || ||||| | ||||| || ||||| || || |||||||| |||| || Sbjct 777 TCGTGCGTGAATGGCAACTCAAGATCAGCCTCATGAAAATCTTATATTCCCTAAGGAGGT 836 Query 162507 T 162507 | Sbjct 837 T 837 >seq532379 Length=15352 Score = 96.9 bits (106), Expect = 4e-15 Identities = 121/165 (73%), Gaps = 1/165 (1%) Strand=Plus/Plus Query 161542 CGAGATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTT 161601 || || |||||||||||||| || |||||||| || | || ||||| ||||||| | Sbjct 14385 CGGGACCGTTTCGTTTTTGTAGGATGGTCTGGCCTATTGCTCTTTCCTTGTGCTTATTTC 14444 Query 161602 GCTATTGGCGGTTGGCTTACTGGCACGACTTTCGCTACGAGCTGGTATACCCATGGACTC 161661 ||| | || ||||| |||| || || ||||| | || |||||||||||| || | Sbjct 14445 GCTTTAGGGTGTTGGTTTACCGGGACAACTTTTGTAACTTTTTGGTATACCCAT-GATTG 14503 Query 161662 GCTAGTTCCTATCTTGAGGGTGCAAATTTTCTTACAGCGGCAGTT 161706 |||||||||||| | || || |||||| | || || | |||| Sbjct 14504 GCTAGTTCCTATTTGGAAGGCTGTAATTTTTTAACCGCAGTAGTT 14548 >seq40677 Length=4500 Score = 89.7 bits (98), Expect = 6e-13 Identities = 112/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 160130 TATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTT 160189 ||||||||||||||||||||||| || || ||| ||||||||||| ||||| |||| Sbjct 154 TATATGGGTCGTGAGTGGGAACTTAGTTTCCATCTGGGTATGCGTCCTTGGATTGCTGTT 95 Query 160190 GCATACTCTGCTCCAGTCGCTGCTGCTTCTGCTGTATTCCTCGTCTACCCCTTCGGTCAG 160249 ||||| || ||| || || |||||| ||| || ||| | | ||||| | || || Sbjct 94 GCATATTCAACTCATGTTGCAGCTGCTACTGTAGTTTTCTTGATTTACCCTATTGGCCAA 35 Query 160250 GGTTCTTTCTCCGATGCTATGCCTCTTGGTATCT 160283 || | || |||| ||| ||| | || |||| Sbjct 34 GGAAGCTCTTCTGATGGTATACCTTTAGGAATCT 1 >seq1484923 Length=1633 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 162221 ACCGTTTCTGGTCACAGATCTTCGGTATTGCTTTTAGTAATAAGCGTTGGTTGCATTTCT 162280 |||| || ||||| || ||||| ||| |||||||| ||||| |||||||| ||||||| Sbjct 1541 ACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCT 1600 Query 162281 TTATGCTCTTCGTTCCCGTCATGGGTCTCTGGA 162313 ||||||| || || ||||||| ||| | |||| Sbjct 1601 TTATGCTATTTGTACCCGTCACCGGTTTATGGA 1633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 540474559014600