Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq68655 143 3e-29 seq539347 122 1e-22 seq216476 122 1e-22 seq542539 111 2e-19 seq428484 89.7 6e-13 seq214663 89.7 6e-13 seq398894 87.8 2e-12 seq40677 84.2 3e-11 seq337787 82.4 9e-11 >seq68655 Length=5599 Score = 143 bits (158), Expect = 3e-29 Identities = 183/252 (73%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 189184 GGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCTTGGATCTGCATTGCTTAC 189243 ||||||||||||||||| || || | ||||||||||||||||| |||| || Sbjct 722 GGTCGTGAGTGGGAACTTAATTTCCACATGGGTATGCGTCCTTGGATTGATGTTGCATAT 781 Query 189244 TCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTGGTCTATCCTTTTGGTCAAGGTTCT 189303 || || | ||||||||| | | || | || || | || ||| ||||| ||| Sbjct 782 TCAGCTCATGTTGCAGCTACTACTGCTATTTTCTTGATTTACCCTATTGGTTAAGTAAGC 841 Query 189304 TTCTCTGACGCAATGCCCTTGGGTATCAGTGGAACCTTCAACTACATGCTTGTCTTCCAA 189363 || | ||| | ||||| || || ||| ||| || |||||| ||| |||| ||||| Sbjct 842 TTTTTTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACATTATGATTGTATTCCAG 901 Query 189364 GCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTCGCAGGTGTCTTCGGT 189423 ||||||||||||||||| ||||| || ||||||||| | || | || ||||| ||||| Sbjct 902 GCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTATAGCTGGTGTATTCGGC 961 Query 189424 GGTTCACTGTTC 189435 ||||| || ||| Sbjct 962 GGTTCCCTATTC 973 >seq539347 Length=3493 Score = 122 bits (134), Expect = 1e-22 Identities = 123/159 (77%), Gaps = 1/159 (1%) Strand=Plus/Plus Query 189307 TCTGACGCAATGCCCTTGGGTATCAGTGGAACCTTCAACTACATGCTTGTCTTCCAAGCA 189366 ||||| | ||||| || || ||| ||| || ||||||| ||| |||| ||||| ||| Sbjct 1 TCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCA 60 Query 189367 GAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTCGCAGGTGTCTTCGGTGGT 189426 |||||||||||||| ||||| || ||||||||| | || || || |||| ||||| ||| Sbjct 61 GAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGC-TGTGTATTCGGCGGT 119 Query 189427 TCACTGTTCTCCGCAATGCATGGTTCACTCGTTACCTCT 189465 | || ||| | || ||||||||||| | || |||||| Sbjct 120 TTCCTATTCACTGCTATGCATGGTTCCTTGGTAACCTCT 158 >seq216476 Length=3150 Score = 122 bits (134), Expect = 1e-22 Identities = 173/238 (73%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 190314 GGATTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGGTATCCGTCCTTACAATGC 190372 || |||||| | || || ||||||| | || ||| | || | || | ||| ||||| Sbjct 3001 GGTTTCATGTTACGCCAATTTGAACATGATCGATCTATTTAGT-TGCGACTTTATAATGC 2943 Query 190373 TATTGCGTTCTCTGGTCCTATCGCTG-TTTTTGTTAGCGTCTTTCTCATCTACCCTCTGG 190431 || | ||||||||||| || | || |||||||| ||| || || | || || |||| Sbjct 2942 AATCCCATTCTCTGGTCCAATTGTTGTTTTTTGTTTCCGTATTCCTTCTTTATCCACTGG 2883 Query 190432 GTCAATCGAGTTGGTTCTTCGCGCCATCCTTCGGTGTGGCAGCGATCTTCCGCTTCCTCC 190491 | ||||| |||||||||| | ||| || ||||| |||||||| || | ||| ||| Sbjct 2882 GGCAATCTGGTTGGTTCTTTGTGCCGAGTTTTGGTGTAGCAGCGATGTTTTGATTCATCC 2823 Query 190492 TCTTCTTGCAGGGCTTCCATAACTGGACGCTGAACCCCTTCCACATGATGGGTGTTGC 190549 | ||||| | || || ||||| |||| | ||||||| || || |||||||| ||||| Sbjct 2822 TTTTCTT-CTAGGATTTCATAATTGGATGTTGAACCCATTTCATATGATGGGAGTTGC 2766 >seq542539 Length=11310 Score = 111 bits (122), Expect = 2e-19 Identities = 108/138 (78%), Gaps = 1/138 (1%) Strand=Plus/Minus Query 189690 CCTCAATGGGTTCAACTTCAATCAATCCATTCTTGATGGTCAAGGTCGTGTTCTGAACAC 189749 |||||| | |||||| ||||||||||| | ||||| || ||||||| || | | || Sbjct 7102 CCTCAA-GCGTTCAATTTCAATCAATCTGTAGTTGATAGTTAAGGTCGCATTATTGATAC 7044 Query 189750 ATGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCATGAGCGTAACGC 189809 ||||| || | ||||||||||| |||||| ||||||| |||||| | ||||| || Sbjct 7043 TTGGGCTGATATCATCAACCGTGCTAACCTTGGTGTGGAAGTTATGCATAAACGTAATGC 6984 Query 189810 TCACAACTTCCCTCTTGA 189827 ||||||||||||||| || Sbjct 6983 TCACAACTTCCCTCTAGA 6966 >seq428484 Length=423 Score = 89.7 bits (98), Expect = 6e-13 Identities = 81/101 (80%), Gaps = 1/101 (1%) Strand=Plus/Plus Query 190656 ACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGTTTCTGGTCTCAAATCTTT 190715 || ||||| ||||| || ||||| ||||||||||| ||||| || ||||| ||||||||| Sbjct 244 ACTCAAGATGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTT 303 Query 190716 GGTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTAT 190756 |||||||| || ||||| | ||||| ||| | ||||| Sbjct 304 GGTGTTGCTTTTTCCAATAAACGTTGGTTACATCT-TTTAT 343 >seq214663 Length=1678 Score = 89.7 bits (98), Expect = 6e-13 Identities = 170/248 (69%), Gaps = 7/248 (3%) Strand=Plus/Plus Query 188876 ACAACCGTCTGTATGTCGGTTGGTTCGGTGTCCTGATGATCCCTACGCTTCTCGCTGCAA 188935 |||| ||||| || |||| ||||| |||| ||||||||||||| ||| | | | | Sbjct 1383 ACAATCGTCTATACATCGGATGGTTTCGTGTTTTGATGATCCCTAC-CTTATTGACGACA 1441 Query 188936 CCATCTG-CTTCATCGTCGCCTTTGTCGCTGCACCCCCTGTAGACATTGATGGCATCCGC 188994 | |||| || || ||||||| |||| || | | ||||| |||||||| || || Sbjct 1442 ACTTCTGTATTTATTATCGCCTTCATCGCCGCCCTTCTAGTAGATATTGATGGTATTCGT 1501 Query 188995 GAACCCGTCGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCTGTTGTCCCT 189054 || | || ||||||| | | || ||||||| || | |||||||| | || ||||| Sbjct 1502 GAGCTTGTTTCTGGTTCTTTACTTTACAGAAACAATATTACCTCTGGTGTTATTATCCCT 1561 Query 189055 TCATCCAACGCAATTGGTCTTCACTTCTACCCCAT-----CTGGGAAGCCGCCTCACTCG 189109 | || || || | | ||||| ||||| || |||||||| || || | | Sbjct 1562 ACTTCTGCGGCGATCAGATTGCACTTGTACCCAATTTGGGATGGGAAGCTGCATCTGTTG 1621 Query 189110 ATGAGTGG 189117 |||||||| Sbjct 1622 ATGAGTGG 1629 >seq398894 Length=318 Score = 87.8 bits (96), Expect = 2e-12 Identities = 129/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 188851 TTCTGCGAATGGGTCACCTCTACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 188910 |||||| | ||| | || ||| | || | ||| || |||| ||||||||||| || Sbjct 140 TTCTGCAACTGGATAACTAGCACTGAAAATCATCTTTACATCGGATGGTTCGGTGTTTTG 199 Query 188911 ATGATCCCTACGCTTCTCGC-TGCAACCATCTGCTTCATCGTCGCCTTTGTCGCTGCACC 188969 ||||||||||| ||| | | | |||| | || || ||||||| ||||||| || Sbjct 200 ATGATCCCTAC-CTTATTGAGTACAACTTCCGTATTTATTATCGCCTTCATCGCTGCCCC 258 Query 188970 CCCTGTAGACATTGATGGCATCCGCGAACCCGTCGCTGGTTCACTCATGTATGGAAACAA 189029 || ||||| |||||||| || || || || || ||||||| | | ||||||||||| Sbjct 259 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 318 >seq40677 Length=4500 Score = 84.2 bits (92), Expect = 3e-11 Identities = 94/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 189178 TACATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCTTGGATCTGC-AT 189236 || |||||||||||||||||||| || || ||| ||||||||||||||||| ||| | Sbjct 154 TATATGGGTCGTGAGTGGGAACTTAGTTTCCATCTGGGTATGCGTCCTTGGAT-TGCTGT 96 Query 189237 TGCTTACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTGGTCTATCCTTTTGGTCA 189296 ||| || || | | ||||||||| || | | ||| || || | || ||| |||| || Sbjct 95 TGCATATTCAACTCATGTTGCAGCTGCTACTGTAGTTTTCTTGATTTACCCTATTGGCCA 36 Query 189297 AGG 189299 ||| Sbjct 35 AGG 33 >seq337787 Length=336 Score = 82.4 bits (90), Expect = 9e-11 Identities = 150/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 188844 GGAATCA-TTCTGCGAATGGGTCACCTCTACTAACAACCGTCTGTATGTCGGTTGGTTCG 188902 || |||| |||||| | ||| | || ||| | || ||||| || |||| || |||| Sbjct 89 GGGATCACTTCTGCAACTGGATAACTAGCACTGAAAATCGTCTTTACATCGGATGATTCG 148 Query 188903 GTGTCCTGATGATCCCTACGCTTCTCG-CTGCAACCATCTGC-TTCATCGTCGCCTTTGT 188960 |||| |||||| |||||| ||| | | |||||||| | || || || || |||| | Sbjct 149 GTGTTTTGATGACCCCTAC-CTTATTGACTGCAACC-TATGTATTTATTATCTCCTTCAT 206 Query 188961 CGCTGCACCCCCTGTAGACATTGATGGCATCCGCGAACCCGTCGCTGGTTCACTCATGTA 189020 | |||| || || |||| |||||||| || || || | || || |||| | | || Sbjct 207 CACTGCCCCTCCACTAGATATTGATGGTATTCGTGAGCATGTT-CTTGTTCTTTACTTTA 265 Query 189021 TGGAAACAACATCATCTCTGGTGCTGTTGTCCC 189053 ||||||||| || |||||||| || |||| Sbjct 266 TGGAAACAATATTNNNNCTGGTGCTATTATCCC 298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621543390318000