Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Secale_20cereale_20[genbank_20GCA_5F900079665.1_202017-02-07] 1,581,707 sequences; 1,684,931,674 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq68655 185 1e-41 seq507140 165 9e-36 seq539347 161 1e-34 seq216476 129 6e-25 seq550293 116 4e-21 seq214663 111 2e-19 seq428484 105 7e-18 seq398894 102 9e-17 seq680530 95.1 1e-14 seq337787 95.1 1e-14 seq43380 93.3 5e-14 seq542539 91.5 2e-13 seq121670 87.8 2e-12 seq1484923 84.2 2e-11 seq40677 84.2 2e-11 >seq68655 Length=5599 Score = 185 bits (204), Expect = 1e-41 Identities = 192/252 (76%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 160905 GGTCGCGAGTGGGAACTTTCCTACCGCCTCGGCATGCGCCCCTGGATCTGCGTTGCATAT 160964 ||||| |||||||||||| | || | | || ||||| || ||||| ||||||||| Sbjct 722 GGTCGTGAGTGGGAACTTAATTTCCACATGGGTATGCGTCCTTGGATTGATGTTGCATAT 781 Query 160965 TCTGCACCTGTTGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCT 161024 || || | |||||| ||| | | ||| | ||| | | || ||| | ||| ||| Sbjct 782 TCAGCTCATGTTGCAGCTACTACTGCTATTTTCTTGATTTACCCTATTGGTTAAGTAAGC 841 Query 161025 TTCTCTGATGGTATGCCCCTGGGTATCTCTGGTACCTTCAACTTCATGCTTGTCTTCCAG 161084 || | |||||||||||| | || ||||||||||| |||||| | ||| |||| |||||| Sbjct 842 TTTTTTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACATTATGATTGTATTCCAG 901 Query 161085 GCAGAACACAACATCCTGATGCACCCCTTCCACATGTTGGGTGTTGCTGGTGTCTTCGGT 161144 ||||| ||||||||||| ||||| || ||||||||||| ||| | |||||||| ||||| Sbjct 902 GCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTATAGCTGGTGTATTCGGC 961 Query 161145 GGTTCTCTGTTC 161156 ||||| || ||| Sbjct 962 GGTTCCCTATTC 973 >seq507140 Length=321 Score = 165 bits (182), Expect = 9e-36 Identities = 199/271 (73%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 164292 ATTGCTGTCTTTGTCAGCGTTTTCCTTATGTACCCTCTCGGGCAATCTAGTTGGTTCTTT 164351 |||| ||| ||||| || |||||||| || || || | ||||||| ||||||||||| Sbjct 49 ATTGTTGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGTGCAATCTGGTTGGTTCTTT 108 Query 164352 GCCCCCTCGTTTGGGGTCGCGGCGATCTTCAGATTCCTCTTGTTCCTCCAAGGTTTCCAT 164411 || || ||||| || || |||| || ||||| || | ||| ||||||| || ||| Sbjct 109 GCGCCGAGTTTTGGCGTAGCAACGATATTTCGATTCATCCTTTTCTTCCAAGGATTTCAT 168 Query 164412 AACTGGACACTCAACCCCTTCCATATGATGGGTGTTGCAGGCATCCTTGGTGGTGCTCTT 164471 || ||||| | ||||| || ||||||||||| ||||| | | | |||| ||||| Sbjct 169 AATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCCGAGTATTAGGTGCGGCTCTG 228 Query 164472 CTCTGTGCTATTCATGGTGCTACCGTAGAGAATACTTTGTTTGAAGATGGTGAACAATCA 164531 || || ||||||||||| || |||||||| || ||| | ||||| || ||||| || Sbjct 229 CTATGCGCTATTCATGGAGCGACCGTAGAAAACACTCTATTTGAGGACGGTGATGGTGCA 288 Query 164532 AATACTTTCAAGGCATTCGAGCCTACTCAAG 164562 ||||| ||| || || | || ||||||| Sbjct 289 AATACCTTCTGTGCTTTTAACCCAACTCAAG 319 >seq539347 Length=3493 Score = 161 bits (178), Expect = 1e-34 Identities = 132/159 (83%), Gaps = 1/159 (1%) Strand=Plus/Plus Query 161028 TCTGATGGTATGCCCCTGGGTATCTCTGGTACCTTCAACTTCATGCTTGTCTTCCAGGCA 161087 |||||||||||||| | || ||||||||||| |||||||| ||| |||| ||||||||| Sbjct 1 TCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCA 60 Query 161088 GAACACAACATCCTGATGCACCCCTTCCACATGTTGGGTGTTGCTGGTGTCTTCGGTGGT 161147 || ||||||||||| ||||| || ||||||||||| ||||| ||| |||| ||||| ||| Sbjct 61 GAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGCT-GTGTATTCGGCGGT 119 Query 161148 TCTCTGTTCTCCGCAATGCATGGTTCACTGGTTACTTCT 161186 | || ||| | || ||||||||||| |||| || ||| Sbjct 120 TTCCTATTCACTGCTATGCATGGTTCCTTGGTAACCTCT 158 >seq216476 Length=3150 Score = 129 bits (142), Expect = 6e-25 Identities = 202/284 (71%), Gaps = 4/284 (1%) Strand=Plus/Minus Query 164214 GGTTTCATGCTTCGGCAGTTTGAAATTGCACG-TCTTGTAGGTATCCGTCCGTACAATGC 164272 ||||||||| | || || |||||| || || ||| | || | || | || ||||| Sbjct 3001 GGTTTCATGTTACGCCAATTTGAACATGATCGATCTATTTAGT-TGCGACTTTATAATGC 2943 Query 164273 TATTGCGTTCTCTGGTCCGATTGCTGTCTTT-GTCAGCGTTTTCCTTATGTACCCTCTCG 164331 || | ||||||||||| |||| ||| ||| || ||| |||||| | || || || | Sbjct 2942 AATCCCATTCTCTGGTCCAATTGTTGTTTTTTGTTTCCGTATTCCTTCTTTATCCACTGG 2883 Query 164332 GGCAATCTAGTTGGTTCTTTGCCCCCTCGTTTGGGGTCGCGGCGATCTTCAGATTCCTCT 164391 |||||||| |||||||||||| || ||||| || || ||||| || ||||| || Sbjct 2882 GGCAATCTGGTTGGTTCTTTGTGCCGAGTTTTGGTGTAGCAGCGATGTTTTGATTCATCC 2823 Query 164392 TGTTCCTCCAAGGTTTCCATAACTGGACACTCAACCCCTTCCATATGATGGGTGTTGCAG 164451 | || || | ||| || ||||| |||| | ||||| || ||||||||||| ||||| Sbjct 2822 T-TTTCTTCTAGGATTTCATAATTGGATGTTGAACCCATTTCATATGATGGGAGTTGCCA 2764 Query 164452 GCATCCTTGGTGGTGCTCTTCTCTGTGCTATTCATGGTGCTACC 164495 || | || | ||||| | || |||||||||| || ||| Sbjct 2763 AAATATTAGGCGTGGCTCTACGATGCACTATTCATGGAGCGACC 2720 >seq550293 Length=8024 Score = 116 bits (128), Expect = 4e-21 Identities = 176/249 (71%), Gaps = 1/249 (0%) Strand=Plus/Minus Query 164200 CTTTCGCTCTGATCGGTTTCATGCTTCGGCAGTTTGAAATTGCACGTCTTGTAGGTATCC 164259 |||| || | || ||||||||| | | | |||||| |||| || ||| | | Sbjct 7584 CTTTTGCACCAATAGGTTTCATGTTACATTAATTTGAACTTGCTCGGTCTGTTCAATTAC 7525 Query 164260 GTCCGTACAATGCTATTGCGTTCTCTGGTCCGATTGCTGTCTTTGTCAGCGTTTTCCTTA 164319 | | || ||||| || |||||||| |||| |||||| | || | | | | ||| ||| Sbjct 7524 GATCTTATAATGCAATCTCGTTCTCTAGTCCAATTGCTATTTTGTTTATC-TATTCTTTA 7466 Query 164320 TGTACCCTCTCGGGCAATCTAGTTGGTTCTTTGCCCCCTCGTTTGGGGTCGCGGCGATCT 164379 | || || |||||||||||| ||||||||||||| | || | | || |||| | Sbjct 7465 TTTATCCACTCGGGCAATCTGGTTGGTTCTTTGCATCGAGTTTCAGCATAGCAACGATAT 7406 Query 164380 TCAGATTCCTCTTGTTCCTCCAAGGTTTCCATAACTGGACACTCAACCCCTTCCATATGA 164439 | |||||| || | ||| ||||| |||| ||||| |||| | ||||| || ||||||| Sbjct 7405 TTAGATTCATCATTTTCTTCCAATGTTTACATAATTGGAGGTTGAACCCATTTCATATGA 7346 Query 164440 TGGGTGTTG 164448 |||| |||| Sbjct 7345 TGGGAGTTG 7337 >seq214663 Length=1678 Score = 111 bits (122), Expect = 2e-19 Identities = 175/248 (71%), Gaps = 7/248 (3%) Strand=Plus/Plus Query 160597 ACAATCGTCTTTACGTCGGTTGGTTCGGTGTGCTGATGATCCCAACTCTGTTGGCAGCAA 160656 |||||||||| ||| |||| ||||| |||| |||||||||| || | ||| | ||| Sbjct 1383 ACAATCGTCTATACATCGGATGGTTTCGTGTTTTGATGATCCCTACCTTATTGACGACAA 1442 Query 160657 CCGTCTGC-TTTATTACTGCGTTCGTTGCTGCTCCCCCCGTGGACATCGACGGTATCCGT 160715 | |||| ||||||| || ||| | || || | | || || || || ||||| ||| Sbjct 1443 CT-TCTGTATTTATTATCGCCTTCATCGCCGCCCTTCTAGTAGATATTGATGGTATTCGT 1501 Query 160716 GAACCCGTTGCTGGTTCACTGATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCT 160775 || | ||| ||||||| | | || ||||||| || | |||||||| || | ||| Sbjct 1502 GAGCTTGTTTCTGGTTCTTTACTTTACAGAAACAATATTACCTCTGGTGTTATTATCCCT 1561 Query 160776 TCTTCCAACGCAATTGGTCTTCACTTCTACCCCATTTGGG-----AAGCTGCATCTCTTG 160830 |||| || || | | ||||| ||||| ||||||| ||||||||||| ||| Sbjct 1562 ACTTCTGCGGCGATCAGATTGCACTTGTACCCAATTTGGGATGGGAAGCTGCATCTGTTG 1621 Query 160831 ATGAATGG 160838 |||| ||| Sbjct 1622 ATGAGTGG 1629 >seq428484 Length=423 Score = 105 bits (116), Expect = 7e-18 Identities = 99/125 (79%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 164530 CAAATACTTTCAAGGCATTCGAGCCTACTCAAGAGGAAGAGACTTACTCGATGGTCACTG 164589 ||||||| ||| || || | || |||||||| ||||| ||||| || |||||||||| Sbjct 218 CAAATACCTTCCGTGCTTTTAACCCAACTCAAGATGAAGAAACTTATTCAATGGTCACTG 277 Query 164590 CCAACCGCTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACT 164649 | |||||||| ||||| || || |||||| ||||||| |||||| |||||||| || Sbjct 278 CTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTT--ACA 335 Query 164650 TCTTT 164654 ||||| Sbjct 336 TCTTT 340 >seq398894 Length=318 Score = 102 bits (112), Expect = 9e-17 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 160572 TTCTGCGAGTGGGTAACTTCTACAAACAATCGTCTTTACGTCGGTTGGTTCGGTGTGCTG 160631 |||||| | ||| ||||| || | |||| ||||||| |||| ||||||||||| || Sbjct 140 TTCTGCAACTGGATAACTAGCACTGAAAATCATCTTTACATCGGATGGTTCGGTGTTTTG 199 Query 160632 ATGATCCCAACTCTGTTGGCAGCAACCGTCTGCTTTATTACTGCGTTCGTTGCTGCTCCC 160691 |||||||| || | ||| |||| | ||||||| || ||| | ||||| || Sbjct 200 ATGATCCCTACCTTATTGAGTACAACTTCCGTATTTATTATCGCCTTCATCGCTGCCCCT 259 Query 160692 CCCGTGGACATCGACGGTATCCGTGAACCCGTTGCTGGTTCACTGATGTATGGAAACAA 160750 || || || || || ||||| ||||| || ||| ||||||| | | ||||||||||| Sbjct 260 CCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 318 >seq680530 Length=586 Score = 95.1 bits (104), Expect = 1e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 160797 CACTTCTACCCCATTTGGGAAGCTGCATCTCTTGATGAATGGCTCTACAATGGTGGTCCT 160856 ||||| ||||| |||||||||||||||| | |||||| ||| | ||||||||||||||| Sbjct 62 CACTTTTACCCAATTTGGGAAGCTGCATTTGCTGATGAGTGGTTATACAATGGTGGTCCT 121 Query 160857 TACCAACTGGTCGTATTTCACTTCCTGATCGGCATCTTCTGCTACATGGGTCGCGAGTGG 160916 || | || | || | ||||| | | || | || || |||||||| |||||| Sbjct 122 TATGAGCTAATTGTTCTAAACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGG 181 Query 160917 GAACTTTCCTACCGCCTCGGCATGC 160941 |||||| | ||| || ||||||| Sbjct 182 GAACTTAGTTTCCGTCTGGGCATGC 206 >seq337787 Length=336 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 3/204 (1%) Strand=Plus/Plus Query 160563 TGGGAACAATTCTGCGAGTGGGTAACTTCTACAAACAATCGTCTTTACGTCGGTTGGTTC 160622 ||||| || |||||| | ||| ||||| || | |||||||||||| |||| || ||| Sbjct 88 TGGGATCACTTCTGCAACTGGATAACTAGCACTGAAAATCGTCTTTACATCGGATGATTC 147 Query 160623 GGTGTGCTGATGATCCCAACTCTGTTGGCAGCAACCGTCTG-CTTTATTACTGCGTTCGT 160681 ||||| |||||| ||| || | ||| | |||||| | || ||||||| | ||| | Sbjct 148 GGTGTTTTGATGACCCCTACCTTATTGACTGCAACC-TATGTATTTATTATCTCCTTCAT 206 Query 160682 TGCTGCTCCCCCCGTGGACATCGACGGTATCCGTGAACCCGTTGCTGGTTCACTGATGTA 160741 |||| || || | || || || ||||| ||||| | ||| || |||| | | || Sbjct 207 CACTGCCCCTCCACTAGATATTGATGGTATTCGTGAGCATGTT-CTTGTTCTTTACTTTA 265 Query 160742 TGGAAACAACATCATCTCTGGTGC 160765 ||||||||| || ||||||| Sbjct 266 TGGAAACAATATTNNNNCTGGTGC 289 >seq43380 Length=4142 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 161490 CGTGCTAACCTTGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTGGA 161548 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || Sbjct 2498 CGTGCTAACCTTGGTATGGAAGTAATGCACGGACGTAATGCTCACAACTTCCCTCTAGA 2440 >seq542539 Length=11310 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 161469 ACCTGGGCTGACGTTCTGAATCGTGCTAACCTTGGTATGGAAGTAATGCACGAGCGTAAT 161528 || |||||||| | | || ||||||||||||||| ||||||| ||||| | |||||| Sbjct 7045 ACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTGTGGAAGTTATGCATAAACGTAAT 6986 Query 161529 GCTCACAACTTCCCTCTGGATCTCGCTGCTGCTGA 161563 ||||||||||||||||| || | |||| || ||| Sbjct 6985 GCTCACAACTTCCCTCTAGACTTAGCTGATGTTGA 6951 >seq121670 Length=2540 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 161466 AACACCTGGGCTGACGTTCTGAATCGTGCTAACCTTGGTATGGAAGTAATGCACGAGCGT 161525 || || |||||||| | || | |||||||||| |||||||||||||||||| | | Sbjct 369 AATACTTGGGCTGATAACATTAACCATGCTAACCTTCGTATGGAAGTAATGCACGTACAT 310 Query 161526 AATGCTCACAACTTCCCTCTGGATCTCGCTGCTGCTGA 161563 |||||||||||||||||||| || | |||| || ||| Sbjct 309 AATGCTCACAACTTCCCTCTAGACTTAGCTGTTGTTGA 272 >seq1484923 Length=1633 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 164593 ACCGCTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCT 164652 ||||||| ||||| || || |||||| ||||||| |||||| |||||||| || |||| Sbjct 1541 ACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCT 1600 Query 164653 TTATGCTCTTTGTTCCTGTCA 164673 ||||||| ||||| || |||| Sbjct 1601 TTATGCTATTTGTACCCGTCA 1621 >seq40677 Length=4500 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/158 (73%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 160896 TGCTACATGGGTCGCGAGTGGGAACTTTCCTACCGCCTCGGCATGCGCCCCTGGATCTGC 160955 || || |||||||| |||||||||||| | || || || ||||| || ||||| ||| Sbjct 157 TGGTATATGGGTCGTGAGTGGGAACTTAGTTTCCATCTGGGTATGCGTCCTTGGAT-TGC 99 Query 160956 -GTTGCATATTCTGCACCTGTTGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGG 161014 ||||||||||| | | |||||| ||||| | || ||| ||| | | || ||| | || Sbjct 98 TGTTGCATATTCAACTCATGTTGCAGCTGCTACTGTAGTTTTCTTGATTTACCCTATTGG 39 Query 161015 TCAAGGTTCTTTCTCTGATGGTATGCCCCTGGGTATCT 161052 ||||| | ||||||||||| || | || |||| Sbjct 38 CCAAGGAAGCTCTTCTGATGGTATACCTTTAGGAATCT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548269337338800