Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq337 80.6 5e-13 seq12 78.8 2e-12 >seq337 Length=135516 Score = 80.6 bits (88), Expect = 5e-13 Identities = 210/312 (67%), Gaps = 14/312 (4%) Strand=Plus/Plus Query 17 GTGAAATAGACCCTGAACCCGCGC---GCCTACAAGCGGTCGGAGCCGA--GTGATTCGG 71 |||||||||| | |||| ||| || || ||||| || |||| || ||||| | Sbjct 96177 GTGAAATAGAACGTGAAACCGTGCTGAGCTCCCAAGCAGTGGGAGGGGAAAGTGAT-CTC 96235 Query 72 TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGGG 131 |||| |||||||| ||| | |||||||| ||| | | | | || || ||||||||| Sbjct 96236 TGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGGTTAAGGG 96294 Query 132 CTTCAGGCCCGTT--AGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCG 189 | ||| ||||| || ||||||||| ||| | ||||||| || || Sbjct 96295 AATGGAACCCACCGGAGCCGTAGCGAAAGCGAGTCTTCATAGGGCGATT-GTCACTGCTT 96353 Query 190 CTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAG--TCGCGGTAACGCGTGA 247 | ||| |||| | |||||||| ||| || |||| ||||| | | | ||| | Sbjct 96354 ATGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGATGAAACTAAGCA 96413 Query 248 TGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAA 307 |||| |||||||| | |||||| | | ||||||| | | || ||||||||||| Sbjct 96414 --GAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAA 96471 Query 308 GGCCAATCAAAC 319 |||| || ||| Sbjct 96472 TGCCACTCGAAC 96483 Score = 80.6 bits (88), Expect = 5e-13 Identities = 210/312 (67%), Gaps = 14/312 (4%) Strand=Plus/Minus Query 17 GTGAAATAGACCCTGAACCCGCGC---GCCTACAAGCGGTCGGAGCCGA--GTGATTCGG 71 |||||||||| | |||| ||| || || ||||| || |||| || ||||| | Sbjct 119243 GTGAAATAGAACGTGAAACCGTGCTGAGCTCCCAAGCAGTGGGAGGGGAAAGTGAT-CTC 119185 Query 72 TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGGG 131 |||| |||||||| ||| | |||||||| ||| | | | | || || ||||||||| Sbjct 119184 TGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGGTTAAGGG 119126 Query 132 CTTCAGGCCCGTT--AGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCG 189 | ||| ||||| || ||||||||| ||| | ||||||| || || Sbjct 119125 AATGGAACCCACCGGAGCCGTAGCGAAAGCGAGTCTTCATAGGGCGATT-GTCACTGCTT 119067 Query 190 CTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAG--TCGCGGTAACGCGTGA 247 | ||| |||| | |||||||| ||| || |||| ||||| | | | ||| | Sbjct 119066 ATGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGATGAAACTAAGCA 119007 Query 248 TGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAA 307 |||| |||||||| | |||||| | | ||||||| | | || ||||||||||| Sbjct 119006 --GAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAA 118949 Query 308 GGCCAATCAAAC 319 |||| || ||| Sbjct 118948 TGCCACTCGAAC 118937 >seq12 Length=360304 Score = 78.8 bits (86), Expect = 2e-12 Identities = 104/143 (73%), Gaps = 1/143 (1%) Strand=Plus/Minus Query 193 GACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTC-GCGGTAACGCGTGATGGA 251 ||| ||||||| |||||| ||| ||||||||||||| || |||| | |||| Sbjct 427 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 368 Query 252 GGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCC 311 |||||||||| | || | ||| | |||||||| | || ||||||||||||||| Sbjct 367 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 308 Query 312 AATCAAACTGGGAAATAGCTCGT 334 || ||| | ||| |||||| || Sbjct 307 AACCAAGATCGGATATAGCTGGT 285 Score = 78.8 bits (86), Expect = 2e-12 Identities = 104/143 (73%), Gaps = 1/143 (1%) Strand=Plus/Minus Query 193 GACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTC-GCGGTAACGCGTGATGGA 251 ||| ||||||| |||||| ||| ||||||||||||| || |||| | |||| Sbjct 132463 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 132404 Query 252 GGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCC 311 |||||||||| | || | ||| | |||||||| | || ||||||||||||||| Sbjct 132403 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 132344 Query 312 AATCAAACTGGGAAATAGCTCGT 334 || ||| | ||| |||||| || Sbjct 132343 AACCAAGATCGGATATAGCTGGT 132321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972796721664