Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq337 336 5e-90 seq14 309 6e-82 seq8 286 7e-75 seq12 264 2e-68 seq9 174 3e-41 seq2 91.5 3e-16 >seq337 Length=135516 Score = 336 bits (372), Expect = 5e-90 Identities = 288/353 (82%), Gaps = 7/353 (2%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | ||||||||||| || | ||||||||||||| |||||| Sbjct 97798 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 97739 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 97738 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 97679 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC---TAACAG 182 ||||||||||||||||| || ||||||| || | ||||| | | || | || Sbjct 97678 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTTCCCTGTCATCAGTTCACCA 97619 Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242 | |||| ||||||| |||| |||||||||||||| || |||||| ||||| |||||| Sbjct 97618 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 97559 Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCATAG 302 || || ||||||||||||||||||||||||| |||||| || ||||| || | | Sbjct 97558 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTTTTG 97499 Query 303 ACA---GGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 | ||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 97498 CGAGGGGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTA 97446 Score = 336 bits (372), Expect = 5e-90 Identities = 288/353 (82%), Gaps = 7/353 (2%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | ||||||||||| || | ||||||||||||| |||||| Sbjct 117622 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 117681 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 117682 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 117741 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC---TAACAG 182 ||||||||||||||||| || ||||||| || | ||||| | | || | || Sbjct 117742 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTTCCCTGTCATCAGTTCACCA 117801 Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242 | |||| ||||||| |||| |||||||||||||| || |||||| ||||| |||||| Sbjct 117802 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 117861 Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCATAG 302 || || ||||||||||||||||||||||||| |||||| || ||||| || | | Sbjct 117862 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTTTTG 117921 Query 303 ACA---GGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 | ||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 117922 CGAGGGGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTA 117974 >seq14 Length=147140 Score = 309 bits (342), Expect = 6e-82 Identities = 285/353 (81%), Gaps = 11/353 (3%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | ||| ||||||| || | ||||||||||||| |||||| Sbjct 62535 GCATCTTCACAGACATGTCTATT-CACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 62593 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| Sbjct 62594 ACGCCTTTCGTGCGGGTCGGAACTTACCCGAC-AGGAATTTCGCTACCTTA-GACCGTTA 62651 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC---TAACAG 182 ||||||||||||||||| || ||||||| || | ||||| | | || | || Sbjct 62652 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTTCCCTGTCATCAGTTCACCA 62711 Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242 | |||| ||||||| |||| |||||||||||||| || |||||| ||||| |||||| Sbjct 62712 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTT- 62770 Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCATAG 302 || || ||||||||||||||||||||||||| |||||| || ||||| || | | Sbjct 62771 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTTTTG 62830 Query 303 ACA---GGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 | ||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 62831 CGAGGGGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTA 62883 >seq8 Length=40689132 Score = 286 bits (316), Expect = 7e-75 Identities = 275/352 (78%), Gaps = 7/352 (2%) Strand=Plus/Plus Query 8 CATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTA 67 ||||||||| | || | ||||||| ||| || | ||||||||||||| ||||||| Sbjct 13626510 CATCTTCACAGACATGTCTATTTCACTGAGCCTCTCTCCGAGACAGTGCCCAGATCGTTA 13626569 Query 68 CGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTAT 127 ||| ||| ||| |||||||||||||| |||||||||||||||||||| ||||||||||| Sbjct 13626570 TGCCATTCATGCAGGTCGGAACTTACCTGACAAGGAATTTCGCTACCTGAGGACCGTTAT 13626629 Query 128 AGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTA----ACAGA 183 ||||||| |||||||| | |||||| | | ||||| | | || || | Sbjct 13626630 AGTTACGACCGCCGTTCCCCAGGGCTTTGGCCGCCGGCTTCCCTGTCATTAGTTCACCAA 13626689 Query 184 TCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAG 243 |||| ||||||||||| |||||||| |||||||| |||||| ||||| |||||| | Sbjct 13626690 CTTCCTTGACCTTCCAGCATTGGGCAGGCATCAGCTCCCATACATGGTCTTACGACTTTG 13626749 Query 244 CAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCATAGA 303 | || |||||||||||||||||||||| || |||||| || ||||| ||| | | Sbjct 13626750 CGGAGACCTGTGTTTTTGGTAAACAGTTGCCCGGGCCTGGTCACTGCGACCTCCTTTTGC 13626809 Query 304 CA---GGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 | ||||||||||||||| ||||||||||| ||||||||||| ||||||| Sbjct 13626810 GAGGGGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTA 13626861 >seq12 Length=360304 Score = 264 bits (292), Expect = 2e-68 Identities = 284/376 (76%), Gaps = 20/376 (5%) Strand=Plus/Plus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 ||| | |||||||||| | || | ||||||||||| ||| || ||||||| | | Sbjct 130588 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 130647 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 ||||||| || ||||||| ||||| ||||| ||||||||||||||||||| |||||| Sbjct 130648 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACTTTAGGA 130707 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180 | |||| |||||| |||||||||||| ||||||| |||| ||| | | || Sbjct 130708 CAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCT--------TATCAC 130759 Query 181 AGATCCCCTT--AACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGA 238 | || |||| |||||||||||||||||||| ||||| ||||||||||| || | | Sbjct 130760 ACTTCTCCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA 130819 Query 239 CTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTC 298 ||||||||| ||||||||||| |||||||||||| ||| | | ||| || | | Sbjct 130820 CTTAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCC 130879 Query 299 ------ATAGACAG----GCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTC 348 | ||| || |||||||||||||| ||||||||||||||||||||||||||| Sbjct 130880 TAATCAAAAGATAGGAGAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTC 130939 Query 349 CTTAACAATAGTTCTC 364 ||| || |||||| Sbjct 130940 CTTCGACATGGTTCTC 130955 >seq9 Length=58970307 Score = 174 bits (192), Expect = 3e-41 Identities = 196/256 (77%), Gaps = 16/256 (6%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| || | ||||||||||| || | ||||||||||||| |||||| Sbjct 2324698 GCATCTTCACATACATATCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 2324639 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTT-AGGACCGTT 125 ||||||||||||||||| | ||||||||||||| |||||||||||||||| |||||| || Sbjct 2324638 ACGCCTTTCGTGCGGGTTGAAACTTACCCGACA-GGAATTTCGCTACCTTTAGGACCATT 2324580 Query 126 ATAGTTACGGCCGCCGTTTACTGGGGCT------TAAGTTCACTG-CTTCGATTGCTCTA 178 ||||||||||| |||| | ||| | | |||| ||| | || | | | | | Sbjct 2324579 ATAGTTACGGC--GCGTTCATCGGGTTTCGTCGCTGGGTTCCCTGTCATC-AGTTCACCA 2324523 Query 179 ACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGA 238 || |||| |||||| |||| |||||||||| |||||| |||||| ||||| ||| Sbjct 2324522 AC----TTCCTTGACCTTCTGGCACTGGGCAGGCGTAAGCTCCCATACATGGTCTTACGA 2324467 Query 239 CTTAGCAGAAACCTGT 254 ||| || || |||||| Sbjct 2324466 CTTTGCGGAGACCTGT 2324451 Score = 77.0 bits (84), Expect = 7e-12 Identities = 63/77 (82%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 ||||||||| | || | ||||||||||| || | | ||||||||||||| ||| || Sbjct 33710489 GCATCTTCATAGACATGTCTATTTCACCGAGCCTCTCTTCGAGACAGTGCCCAGATCATT 33710430 Query 67 ACGCCTTTCGTGCGGGT 83 ||||||||||||||||| Sbjct 33710429 ACGCCTTTCGTGCGGGT 33710413 >seq2 Length=49199997 Score = 91.5 bits (100), Expect = 3e-16 Identities = 84/106 (79%), Gaps = 3/106 (3%) Strand=Plus/Plus Query 250 CCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCATAGACAGG-- 307 |||||||||||||||||||||||| |||||| || ||||| || | | ||| Sbjct 18750495 CCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCATTTTGCGAGGGG 18750554 Query 308 -CACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 ||||||||||||| || ||||| || |||||||||||||||||| Sbjct 18750555 GCACCCCTTCTCCCAAATTTACGAGGCTATTTTGCCGAGTTCCTTA 18750600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062396419712