Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq337 435 9e-120 seq14 421 2e-115 seq12 167 7e-39 seq4 129 2e-27 seq3 95.1 4e-17 seq5 93.3 1e-16 >seq337 Length=135516 Score = 435 bits (482), Expect = 9e-120 Identities = 397/497 (80%), Gaps = 4/497 (1%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 92596 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 92655 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| |||| |||||||||||||||| |||||||| | || |||| Sbjct 92656 GTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGACATGCCGCGAATCCTC 92715 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 | || | ||||| | |||| ||| || | ||||||| ||||||| ||||||||| Sbjct 92716 TTGAAAGAGAGGGGTGCCCTC--GGGAACGCGGACACAGGTGGTGCATGGCTGTCGTCAG 92773 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 |||||| ||| || |||||||||||||| |||||||||||||||||| | |||||||| Sbjct 92774 CTCGTGCCGTAAGGTGTTGGGTTAAGTCTCGCAACGAGCGCAACCCTCGTGTTTAGTTGC 92833 Query 241 CATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGAC 300 || || | ||| || || || | ||| ||||||| || ||||||||||| | ||| Sbjct 92834 CACTATGA-GTTTGGAACCCTGAACAGACCGCCGGTGTTAAGCCGGAGGAAGGAGAGGAT 92892 Query 301 GACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATAC 360 || | ||| ||||||||||||||||| ||||| |||||||||||||||||| | || Sbjct 92893 GAGGCCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGGCGGGAC 92952 Query 361 AAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTG 420 |||||| |||| ||||||| ||| || ||| ||| || |||||||||||||| Sbjct 92953 AAAGGGTCGCGATCTCGCGAGGGTGAGCTAACTCCAAAAACCCGTCCTCAGTTCGGATTG 93012 Query 421 TAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCTA 479 || |||||||||| || ||||||| ||||||||||||||||| | |||| ||| | Sbjct 93013 CAGGCTGCAACTCGCCTGCATGAAGCAGGAATCGCTAGTAATCGCCGGTCAGCCATACGG 93072 Query 480 CGGTGAATACGTTCCCG 496 |||||||| |||||||| Sbjct 93073 CGGTGAATCCGTTCCCG 93089 Score = 435 bits (482), Expect = 9e-120 Identities = 397/497 (80%), Gaps = 4/497 (1%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 122823 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 122764 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| |||| |||||||||||||||| |||||||| | || |||| Sbjct 122763 GTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGACATGCCGCGAATCCTC 122704 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 | || | ||||| | |||| ||| || | ||||||| ||||||| ||||||||| Sbjct 122703 TTGAAAGAGAGGGGTGCCCTC--GGGAACGCGGACACAGGTGGTGCATGGCTGTCGTCAG 122646 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 |||||| ||| || |||||||||||||| |||||||||||||||||| | |||||||| Sbjct 122645 CTCGTGCCGTAAGGTGTTGGGTTAAGTCTCGCAACGAGCGCAACCCTCGTGTTTAGTTGC 122586 Query 241 CATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGAC 300 || || | ||| || || || | ||| ||||||| || ||||||||||| | ||| Sbjct 122585 CACTATGA-GTTTGGAACCCTGAACAGACCGCCGGTGTTAAGCCGGAGGAAGGAGAGGAT 122527 Query 301 GACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATAC 360 || | ||| ||||||||||||||||| ||||| |||||||||||||||||| | || Sbjct 122526 GAGGCCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGGCGGGAC 122467 Query 361 AAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTG 420 |||||| |||| ||||||| ||| || ||| ||| || |||||||||||||| Sbjct 122466 AAAGGGTCGCGATCTCGCGAGGGTGAGCTAACTCCAAAAACCCGTCCTCAGTTCGGATTG 122407 Query 421 TAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCTA 479 || |||||||||| || ||||||| ||||||||||||||||| | |||| ||| | Sbjct 122406 CAGGCTGCAACTCGCCTGCATGAAGCAGGAATCGCTAGTAATCGCCGGTCAGCCATACGG 122347 Query 480 CGGTGAATACGTTCCCG 496 |||||||| |||||||| Sbjct 122346 CGGTGAATCCGTTCCCG 122330 >seq14 Length=147140 Score = 421 bits (466), Expect = 2e-115 Identities = 396/498 (80%), Gaps = 6/498 (1%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||||||||| |||||||| |||||||||||| Sbjct 67696 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACA-GCGGTGGAGCAT 67638 Query 61 GTGG-TTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCT 119 |||| |||||||||| |||| |||||||||||||||| |||||||| | || ||| Sbjct 67637 GTGGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGACATGCCGCGAATCCT 67578 Query 120 CTAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCA 179 || || | ||||| | |||| ||| || | ||||||| ||||||| |||||||| Sbjct 67577 CTTGAAAGAGAGGGGTGCCCTC--GGGAACGCGGACACAGGTGGTGCATGGCTGTCGTCA 67520 Query 180 GCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTG 239 ||||||| ||| || |||||||||||||| |||||||||||||||||| | ||||||| Sbjct 67519 GCTCGTGCCGTAAGGTGTTGGGTTAAGTCTCGCAACGAGCGCAACCCTCGTGTTTAGTTG 67460 Query 240 CCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGA 299 ||| || | ||| || || || | ||| ||||||| || ||||||||||| | ||| Sbjct 67459 CCACTATGA-GTTTGGAACCCTGAACAGACCGCCGGTGTTAAGCCGGAGGAAGGAGAGGA 67401 Query 300 CGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATA 359 || | ||| ||||||||||||||||| ||||| |||||||||||||||||| | | Sbjct 67400 TGAGGCCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGGCGGGA 67341 Query 360 CAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATT 419 ||||||| |||| ||||||| ||| || ||| ||| || ||||||||||||| Sbjct 67340 CAAAGGGTCGCGATCTCGCGAGGGTGAGCTAACTCCAAAAACCCGTCCTCAGTTCGGATT 67281 Query 420 GTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCT 478 | || |||||||||| || ||||||| ||||||||||||||||| | |||| ||| | Sbjct 67280 GCAGGCTGCAACTCGCCTGCATGAAGCAGGAATCGCTAGTAATCGCCGGTCAGCCATACG 67221 Query 479 ACGGTGAATACGTTCCCG 496 |||||||| |||||||| Sbjct 67220 GCGGTGAATCCGTTCCCG 67203 >seq12 Length=360304 Score = 167 bits (184), Expect = 7e-39 Identities = 183/238 (77%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 267 GACTGCCGGTGACAAACCGGAGGAAGG-TGGGGACGACGTCAAATCATCATGCCCCTTAT 325 ||||||| |||| | || ||||||| | |||||| |||||||| || |||| | |||| Sbjct 299592 GACTGCCAGTGAGATACTGGAGGAACGCTGGGGATGACGTCAAGTCCGCATGGGCGTTAT 299533 Query 326 GATTTGGGCTACACACGTGCTACAATGGACAAT-ACAAAGGGCAGCGAAACCGCGAGGTC 384 | ||||| |||||||||||||||||| |||| |||| ||| ||| | | | ||| Sbjct 299532 GGGCTGGGCCACACACGTGCTACAATGG-CAATGACAATGGGAAGCAAGGCTGTAAGGCG 299474 Query 385 AAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAA 444 ||| ||||| || ||| |||||||||||||| ||||||||||| | ||||| Sbjct 299473 GAGCGAATCCGGAAAGATTGCA-TCAGTTCGGATTGTTCTCTGCAACTCGGGAACATGAA 299415 Query 445 GCTGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTTCCCGCTCCCT 502 | || ||||||||||||||| ||||||||||| ||||||||| || |||| |||| Sbjct 299414 GTTGAAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATATGTACCCGGGCCCT 299357 >seq4 Length=40407879 Score = 129 bits (142), Expect = 2e-27 Identities = 178/248 (72%), Gaps = 11/248 (4%) Strand=Plus/Plus Query 210 CGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGGGCACTCTAAGTTGAC 269 ||||||||||| |||||| | |||||||||| || | ||| | || || | ||| Sbjct 37798784 CGCAACGAGCGTAACCCTCGTGTTTAGTTGCCACTATGA-GTTTGAAACCCTGAACAGAC 37798842 Query 270 TGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATT 329 ||| ||| || ||||||||||| | ||| || | ||| ||||||||||||||||| Sbjct 37798843 CGCCTGTGTTAAGCCGGAGGAAGGAGAGGATGAGGCCAAGTCATCATGCCCCTTATGCCC 37798902 Query 330 TGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAG-GTCAAGC 388 || || |||||||||||||||||| | | |||||| |||| |||||| || | Sbjct 37798903 TGAGCGACACACGTGCTACAATGGGCGGGATAAAGGGTCGCGATCTCGCGAGAGTGAGCT 37798962 Query 389 AAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTG 448 || || | ||| || |||||||||||||| || || || ||||||| | Sbjct 37798963 AACTCAAAAAAACCCGTCCTCAGTTCGGATTGCAGGCT---------CTGCATGAAGCAG 37799013 Query 449 GAATCGCT 456 |||||||| Sbjct 37799014 GAATCGCT 37799021 >seq3 Length=50651951 Score = 95.1 bits (104), Expect = 4e-17 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 156 ACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAAC 215 ||||||| ||||||| ||||||||||||||||||||||||||| ||| |||||| ||| Sbjct 12773301 ACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTCGTGAGATGTTTGGTCAAGTCCTATAAC 12773242 Query 216 GAGCGCAACCCT 227 ||||| |||||| Sbjct 12773241 GAGCGAAACCCT 12773230 >seq5 Length=47252588 Score = 93.3 bits (102), Expect = 1e-16 Identities = 98/128 (77%), Gaps = 2/128 (2%) Strand=Plus/Plus Query 100 CTTGACATCCTCTGACCCCTCTAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAG 159 |||||||| || || ||||| || | ||||| | |||| || | || |||| Sbjct 23010863 CTTGACATGCTACGAATCCTCTTGAAAGAGAGGGGTGCCCTCGGGAATGCGGAC--ACAG 23010920 Query 160 GTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGC 219 ||| |||||| ||||||||||||||| ||| || |||||||||||||| ||||| |||| Sbjct 23010921 GTGGTGCATGACTGTCGTCAGCTCGTGCCGTAAGGTGTTGGGTTAAGTCTCGCAATGAGC 23010980 Query 220 GCAACCCT 227 ||||||| Sbjct 23010981 ACAACCCT 23010988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503994931520