Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq337 167 5e-39 seq14 167 5e-39 seq12 107 4e-21 seq8 93.3 8e-17 >seq337 Length=135516 Score = 167 bits (184), Expect = 5e-39 Identities = 177/232 (76%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 97986 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 98045 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC---AGTGCAAAGGCAAAAGG 227 | ||||| | |||| | || ||| ||| | | |||||||||||| |||| Sbjct 98046 GTGCAAAGGTTTCCTCGGGCCAGACGGA---CATTGGTCCTCGAGTGCAAAGGCAGAAGG 98102 Query 228 GTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGC 287 | | |||||||| | || | | ||| ||||| |||||||||||| |||| ||||||| | Sbjct 98103 GAGCTTGACTGCAAGACTCACCCGTCGAGCAGAGACGAAAGTCGGCCTTAGTGATCCGAC 98162 Query 288 GGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||||| || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 98163 GGTGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 98214 Score = 167 bits (184), Expect = 5e-39 Identities = 177/232 (76%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 117434 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 117375 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC---AGTGCAAAGGCAAAAGG 227 | ||||| | |||| | || ||| ||| | | |||||||||||| |||| Sbjct 117374 GTGCAAAGGTTTCCTCGGGCCAGACGGA---CATTGGTCCTCGAGTGCAAAGGCAGAAGG 117318 Query 228 GTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGC 287 | | |||||||| | || | | ||| ||||| |||||||||||| |||| ||||||| | Sbjct 117317 GAGCTTGACTGCAAGACTCACCCGTCGAGCAGAGACGAAAGTCGGCCTTAGTGATCCGAC 117258 Query 288 GGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||||| || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 117257 GGTGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 117206 >seq14 Length=147140 Score = 167 bits (184), Expect = 5e-39 Identities = 177/232 (76%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 62347 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 62288 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC---AGTGCAAAGGCAAAAGG 227 | ||||| | |||| | || ||| ||| | | |||||||||||| |||| Sbjct 62287 GTGCAAAGGTTTCCTCGGGCCAGACGGA---CATTGGTCCTCGAGTGCAAAGGCAGAAGG 62231 Query 228 GTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGC 287 | | |||||||| | || | | ||| ||||| |||||||||||| |||| ||||||| | Sbjct 62230 GAGCTTGACTGCAAGACTCACCCGTCGAGCAGAGACGAAAGTCGGCCTTAGTGATCCGAC 62171 Query 288 GGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||||| || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 62170 GGTGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 62119 >seq12 Length=360304 Score = 107 bits (118), Expect = 4e-21 Identities = 163/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169 ||||||| || || ||| ||||| ||||||||| |||||| ||||||||||||||| Sbjct 130419 CGGGACACTGCGAGGTGGGTAGTTTATCTGGGGCGGATGCCTCCTAAAGAGTAACGGAGG 130360 Query 170 CGCCCAAAGATACCCTCA-GCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGG 228 | | ||| || |||| || | ||| | || || | || || | ||| Sbjct 130359 TGTGCGAAGGTAGGCTCAAGCGTTGATTCTGCTCGTGAGC-----GTAATGGTATAAGCC 130305 Query 229 TGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCG 288 || |||||| || ||| | ||| | ||| |||||||||||| | || |||||||| Sbjct 130304 TGCCTGACTGTGAGACCGACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGGA 130245 Query 289 GTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 || | | ||||| ||| |||||| |||||| |||| ||| | ||||||| Sbjct 130244 GTCCCGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATA 130194 >seq8 Length=40689132 Score = 93.3 bits (102), Expect = 8e-17 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 261 GACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGAT 320 |||||||||||| |||| ||||||| |||||| || ||||| |||||| |||| |||||| Sbjct 33787057 GACGAAAGTCGGCCTTAGTGATCCGACGGTGCCGAGTGGAAGGGCCGTTGCTCAACGGAT 33786998 Query 321 AAAAGCTACCCTGGGGATA 339 ||||| ||| || |||||| Sbjct 33786997 AAAAGTTACTCTAGGGATA 33786979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982396689312