Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq337 217 3e-54 seq14 214 4e-53 seq12 206 6e-51 seq9 201 2e-49 seq2 190 4e-46 seq5 136 8e-30 seq7 82.4 2e-13 >seq337 Length=135516 Score = 217 bits (240), Expect = 3e-54 Identities = 151/170 (89%), Gaps = 1/170 (1%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 92133 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 92075 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| | Sbjct 92074 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 92015 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198 || |||| |||||||||| ||| ||| ||||||||||||||||||| ||| Sbjct 92014 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGAC 91965 Score = 217 bits (240), Expect = 3e-54 Identities = 151/170 (89%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 123286 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 123344 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| | Sbjct 123345 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 123404 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198 || |||| |||||||||| ||| ||| ||||||||||||||||||| ||| Sbjct 123405 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGAC 123454 >seq14 Length=147140 Score = 214 bits (236), Expect = 4e-53 Identities = 150/170 (88%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||| ||||||||| Sbjct 68159 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCAATGCTGCCTC 68217 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| | Sbjct 68218 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 68277 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198 || |||| |||||||||| ||| ||| ||||||||||||||||||| ||| Sbjct 68278 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGAC 68327 >seq12 Length=360304 Score = 206 bits (228), Expect = 6e-51 Identities = 180/220 (82%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58 |||||||| | | | | ||||||| ||| |||||| |||| ||||||| ||||||||| Sbjct 301298 CTTTACAAGCGGCATTGCCCTTCTT-CACTCACGCGATATTG-CTGGATCGGGCTTTCGC 301355 Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118 ||||||||||| |||||||||||||||| ||||| |||||| || |||||||||||| || Sbjct 301356 CCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCC 301415 Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178 |||||| |||||||||| ||||||| || | ||| | | |||||| |||| |||||| Sbjct 301416 AGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCT 301475 Query 179 CACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGC 218 |||||||| ||||| | || ||||||||| | ||||| Sbjct 301476 GACCAACTACCTAATACTACGCAGGCTCATCAAACAGCGC 301515 >seq9 Length=58970307 Score = 201 bits (222), Expect = 2e-49 Identities = 148/170 (87%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || ||||||||||| |||||||| || |||||||||||||||||| Sbjct 32060512 CACGCGGCATTG-CTCCATCAGGCTTTCACCCATTGTAGAAAATTCCCCACTGCTGCCTC 32060454 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||| ||||| |||||||| ||| |||||||| |||||||||||||| |||||| | Sbjct 32060453 CCGTAGGAATCTGGGCCGTGTCTTAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 32060394 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198 || |||| || ||||||| ||| ||| ||||||| ||||||||||| ||| Sbjct 32060393 ACTGATCATCACCTTGGTAAGCTATTGCCTCACC-ACTAGCTAATCAGAC 32060345 Score = 172 bits (190), Expect = 1e-40 Identities = 171/218 (78%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58 |||||||| | | | | ||||||| ||| |||||| |||| ||||||| ||||||||| Sbjct 39241360 CTTTACAAGCGGCATTGCCCTTCTT-CACTCACGCGATATTG-CTGGATCGGGCTTTCGC 39241303 Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118 ||| |||||| |||||||||||||||| ||| | |||||| || || ||||||||| || Sbjct 39241302 TCATCGTCCAAGATTCCCCACTGCTGCCCCCCATGGGAGTCCGGGCCATGTCTCAGTCCC 39241243 Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178 |||||| ||||||||| |||| || || | ||| | | |||||| | || |||||| Sbjct 39241242 AGTGTGGTTGATCATCCGAAAAGACTAGCTAAGCATCATTGGCTTGGTAAACCTTTACCT 39241183 Query 179 CACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGC 216 |||||||| ||||| | || |||||||| ||||| Sbjct 39241182 GACCAACTACCTAATACTACGCCGGCTCATCAAATAGC 39241145 >seq2 Length=49199997 Score = 190 bits (210), Expect = 4e-46 Identities = 145/170 (85%), Gaps = 1/170 (1%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 8821848 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 8821790 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 | |||||||| ||| | |||||||||| |||||||| |||||||||||||| |||||| | Sbjct 8821789 CAGTAGGAGTGTGGGCAGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGAT 8821730 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198 | ||| | |||||||| ||| ||| ||||||||||||||||||| ||| Sbjct 8821729 AATGATGATGGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGAC 8821680 >seq5 Length=47252588 Score = 136 bits (150), Expect = 8e-30 Identities = 142/184 (77%), Gaps = 2/184 (1%) Strand=Plus/Plus Query 11 CGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAAT 70 || || ||||| || | ||| |||||||| || |||| |||||| ||| || || Sbjct 39408741 CGTAGGCCTTCCATCTC-CACACGGCATTG-CTCCGTCAGACTTTCGTCCAATGCGGAAA 39408798 Query 71 ATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGAT 130 |||||||||||||||||||| || || || || || ||||||| | ||| |||| || || Sbjct 39408799 ATTCCCCACTGCTGCCTCCCATAAGAATCCGGGCCATGTCTCATTCCCACTGTGCCTAAT 39408858 Query 131 CATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCT 190 ||||||||| ||||| ||| ||| || | |||| ||| ||| ||||||||||| ||| Sbjct 39408859 CATCCTCTCGTACCAGCTACTTATCATCATCATGGTAAGCTATTGCCTCACCAACTTGCT 39408918 Query 191 AATC 194 |||| Sbjct 39408919 AATC 39408922 >seq7 Length=35964315 Score = 82.4 bits (90), Expect = 2e-13 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 75 CCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATC 134 |||| |||||||||||||| |||| || ||||||||| ||||| |||| ||||||||| Sbjct 31552294 CCCATTGCTGCCTCCCGTAAGAGTTGGGGTCGTGTCTCATTTCCATTGTGGCTGATCATC 31552353 Query 135 CTCTCAGACC 144 ||||| |||| Sbjct 31552354 CTCTCGGACC 31552363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071996387360