Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq337 246 1e-62 seq14 230 8e-58 seq12 172 2e-40 seq8 134 5e-29 seq3 100 1e-18 seq1 82.4 3e-13 >seq337 Length=135516 Score = 246 bits (272), Expect = 1e-62 Identities = 344/476 (72%), Gaps = 30/476 (6%) Strand=Plus/Minus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | | ||| || |||| |||||| Sbjct 96525 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 96466 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||||| || | | |||||| | ||| ||||||| |||| | || Sbjct 96465 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCTGCTTAGT 96406 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | | || |||||| |||| |||||||||||||| | ||||||| | | | | ||| Sbjct 96405 TTCATCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 96346 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTAC-------CCCACACGGGT 367 || | |||||||| |||||||||||||||||||| | ||| | | Sbjct 96345 ACAAT----CGCCCTATGAAGACTCGCTTTCGCTACGGCTCCGGTGGGTTCCATTC-CCT 96291 Query 368 TAACCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCT 426 ||||| || ||| | | | |||| |||||||||||||| |||||||| |||| Sbjct 96290 TAACCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA-GA 96234 Query 427 GGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGC---ACATGGTTTCAGGTACTA 483 | | || ||| |||| || | ||| || || ||||||| || ||| Sbjct 96233 GATCACT---------TTCCCCTCCCACTGCTTGGGAGCTCAGCACGGTTTCACGTTCTA 96183 Query 484 TTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGT 543 ||||||| ||| | ||||| ||||||||||||||||||||||||| | |||||||||| Sbjct 96182 TTTCACTACCCACTGGGGGTTCTTTTCACCTTTCCCTCACGGTACTACTTCGCTATCGGT 96123 Query 544 CACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 |||| |||||||||||| ||| |||||||| | |||||||||| ||| || Sbjct 96122 CACCCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 96067 Score = 246 bits (272), Expect = 1e-62 Identities = 344/476 (72%), Gaps = 30/476 (6%) Strand=Plus/Plus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | | ||| || |||| |||||| Sbjct 118895 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 118954 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||||| || | | |||||| | ||| ||||||| |||| | || Sbjct 118955 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCTGCTTAGT 119014 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | | || |||||| |||| |||||||||||||| | ||||||| | | | | ||| Sbjct 119015 TTCATCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 119074 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTAC-------CCCACACGGGT 367 || | |||||||| |||||||||||||||||||| | ||| | | Sbjct 119075 ACAAT----CGCCCTATGAAGACTCGCTTTCGCTACGGCTCCGGTGGGTTCCATTC-CCT 119129 Query 368 TAACCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCT 426 ||||| || ||| | | | |||| |||||||||||||| |||||||| |||| Sbjct 119130 TAACCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA-GA 119186 Query 427 GGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGC---ACATGGTTTCAGGTACTA 483 | | || ||| |||| || | ||| || || ||||||| || ||| Sbjct 119187 GATCACT---------TTCCCCTCCCACTGCTTGGGAGCTCAGCACGGTTTCACGTTCTA 119237 Query 484 TTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGT 543 ||||||| ||| | ||||| ||||||||||||||||||||||||| | |||||||||| Sbjct 119238 TTTCACTACCCACTGGGGGTTCTTTTCACCTTTCCCTCACGGTACTACTTCGCTATCGGT 119297 Query 544 CACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 |||| |||||||||||| ||| |||||||| | |||||||||| ||| || Sbjct 119298 CACCCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 119353 >seq14 Length=147140 Score = 230 bits (254), Expect = 8e-58 Identities = 342/476 (72%), Gaps = 33/476 (7%) Strand=Plus/Plus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | | ||| || |||| |||||| Sbjct 63793 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 63852 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||||| || | | |||||| | ||| ||||||| |||| | || Sbjct 63853 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCTGCTTAGT 63912 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | | || |||||| |||| |||||||||||||| | ||||||| | | | | ||| Sbjct 63913 -TCATCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 63971 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTAC-------CCCACACGGGT 367 || |||||||| |||||||||||||||||||| | ||| | | Sbjct 63972 ACA-----TCGCCCTATGAAGACTCGCTTTCGCTACGGCTCCGGTGGGTTCCATTC-CCT 64025 Query 368 TAACCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCT 426 ||||| || ||| | | | |||| |||||||||||||| |||||||| |||| Sbjct 64026 TAACCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA-GA 64082 Query 427 GGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGC---ACATGGTTTCAGGTACTA 483 | | || ||| |||| || | ||| || || ||||||| || ||| Sbjct 64083 GATCACT---------TTCCCCTCCCACTGCTTGGGAGCTCAGCACGGTTTCACGTTCTA 64133 Query 484 TTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGT 543 ||||||| ||| | ||||| ||||||||||||||||||||||||| | |||||||||| Sbjct 64134 TTTCACTACCCACTGGGGGTTCTTTTCACCTTTCCCTCACGGTACTACTTCGCTATCGGT 64193 Query 544 CACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 |||| | |||||||||| ||| |||||||| | |||||||||| ||| || Sbjct 64194 CACCCA-GAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 64248 >seq12 Length=360304 Score = 172 bits (190), Expect = 2e-40 Identities = 351/504 (70%), Gaps = 27/504 (5%) Strand=Plus/Plus Query 85 TGTGGGCC-CCCTAGACCATCCAGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCAC 143 || ||||| |||||| |||| ||||||||||||| || | ||| ||||| || Sbjct 205 TGGGGGCCACCCTAGCCCATTGAGTGCTCTACCTCGGGCCATCGACATCATACGCTCTAC 264 Query 144 CTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATC 203 |||| |||||| ||| |||||||||| | | ||| ||||||||||||||||| | Sbjct 265 TGAAATAGATTTCGCGGAAAACCAGCTATATCCGATCTTGGTTGGCCTTTCACCCCTAGC 324 Query 204 CACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTA-CC 262 |||| ||||||||| | ||| | || || ||||||||||||||||| | | ||| Sbjct 325 CACAAGTCATCCCCGTATTTTGCCACATACGTGGGTTCGGTCCTCCAAGGCCTGTTAGAG 384 Query 263 CGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCAT 322 | | ||||||||||| ||||| |||||| | | |||||||| || | | | | Sbjct 385 CTCTCTTCAACCTGCTCATGGCTAGATCGATCGGTTTCGGGTC-AAATAG-GAAGAACGT 442 Query 323 ACGCCCTATTCGGACTCGCTTTCGCTA-CGGCTACCCCACACGGGTTAA-CCTCGCGACA 380 | | ||| || || | | | || |||| || | || |||| || | | Sbjct 443 A---AATCTTC-CAC---CTCTGGAAAGCGCCTACACCTAATGGCTTAAGCCGCTGTTCC 495 Query 381 CAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCA-CCTG-GTACCTAAAAG 438 || | ||||| | | ||| | | ||||| ||||||| | || || | Sbjct 496 CATTTC---CTCGCTGACCCATCATGCGAAAGGTACGCCGTTAGAGTGAGTGC---GCCC 549 Query 439 GCACTTCAGCTC---CGACGGATTGTAGGCACATGGTTTCAGGT--ACTATTTCACTCCC 493 || | || |||| |||| |||||| ||| | | |||||| ||||| ||||||| Sbjct 550 GCGC-TCCGCTCCTTCGACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCC 608 Query 494 CGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAG 553 || ||||| |||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 609 CGATTGGGGTTCTTTTCACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAA 668 Query 554 TATTTAGGCTTAACGGGTGGTCCC 577 || ||||||||| |||||||||| Sbjct 669 TACTTAGGCTTAGAGGGTGGTCCC 692 Score = 172 bits (190), Expect = 2e-40 Identities = 351/504 (70%), Gaps = 27/504 (5%) Strand=Plus/Plus Query 85 TGTGGGCC-CCCTAGACCATCCAGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCAC 143 || ||||| |||||| |||| ||||||||||||| || | ||| ||||| || Sbjct 132241 TGGGGGCCACCCTAGCCCATTGAGTGCTCTACCTCGGGCCATCGACATCATACGCTCTAC 132300 Query 144 CTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATC 203 |||| |||||| ||| |||||||||| | | ||| ||||||||||||||||| | Sbjct 132301 TGAAATAGATTTCGCGGAAAACCAGCTATATCCGATCTTGGTTGGCCTTTCACCCCTAGC 132360 Query 204 CACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTA-CC 262 |||| ||||||||| | ||| | || || ||||||||||||||||| | | ||| Sbjct 132361 CACAAGTCATCCCCGTATTTTGCCACATACGTGGGTTCGGTCCTCCAAGGCCTGTTAGAG 132420 Query 263 CGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCAT 322 | | ||||||||||| ||||| |||||| | | |||||||| || | | | | Sbjct 132421 CTCTCTTCAACCTGCTCATGGCTAGATCGATCGGTTTCGGGTC-AAATAG-GAAGAACGT 132478 Query 323 ACGCCCTATTCGGACTCGCTTTCGCTA-CGGCTACCCCACACGGGTTAA-CCTCGCGACA 380 | | ||| || || | | | || |||| || | || |||| || | | Sbjct 132479 A---AATCTTC-CAC---CTCTGGAAAGCGCCTACACCTAATGGCTTAAGCCGCTGTTCC 132531 Query 381 CAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCA-CCTG-GTACCTAAAAG 438 || | ||||| | | ||| | | ||||| ||||||| | || || | Sbjct 132532 CATTTC---CTCGCTGACCCATCATGCGAAAGGTACGCCGTTAGAGTGAGTGC---GCCC 132585 Query 439 GCACTTCAGCTC---CGACGGATTGTAGGCACATGGTTTCAGGT--ACTATTTCACTCCC 493 || | || |||| |||| |||||| ||| | | |||||| ||||| ||||||| Sbjct 132586 GCGC-TCCGCTCCTTCGACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCC 132644 Query 494 CGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAG 553 || ||||| |||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 132645 CGATTGGGGTTCTTTTCACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAA 132704 Query 554 TATTTAGGCTTAACGGGTGGTCCC 577 || ||||||||| |||||||||| Sbjct 132705 TACTTAGGCTTAGAGGGTGGTCCC 132728 >seq8 Length=40689132 Score = 134 bits (148), Expect = 5e-29 Identities = 277/405 (68%), Gaps = 34/405 (8%) Strand=Plus/Plus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | | ||| || | || |||||| Sbjct 13627782 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTAGCATTTCAC 13627841 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||||| || | | |||||| | ||| ||||| |||| | || Sbjct 13627842 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCAATTCGGACCTCTGCTTAGT 13627901 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | | || |||||| ||| || ||||||||||| | | || |||| | | | | ||| Sbjct 13627902 TTCATCCAAGCTTCATCCTAGTCAGGGATAGATCACCTAGGTTTGGGTCCATAAGCAGTG 13627961 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTAC-------CCCACACGGGT 367 || ||| |||||| ||||||||||| ||| ||| | ||| | | Sbjct 13627962 ACAATCA----CCCTATGAAGACTCGCTTTCAATACAGCTTCAGTGGGTTCCATTC-CCT 13628016 Query 368 TAACCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCT 426 ||||| || || | | | |||| |||||||||||||| | |||||| |||| Sbjct 13628017 TAACCAAGC--CATTGCCTATGAGTCGCCGGCTCATTCTTCAACACGCACGCGGTCA-GA 13628073 Query 427 GGTACCTAAAAGGCACTTCAGCTCCGACGGATTG-----TAGGCACATGGTTTCAGGTAC 481 | | || || |||| || | ||| | ||||| |||||| || | Sbjct 13628074 GATCACT---------TTTCCCTCCCACTGCTTGGGAGCTCAGCACA--GTTTCATGTTC 13628122 Query 482 TATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGT 526 ||||||||| ||| | ||||| |||||||||||||||||||||| Sbjct 13628123 TATTTCACTACCCACTGGGGGTTCTTTTCACCTTTCCCTCACGGT 13628167 >seq3 Length=50651951 Score = 100 bits (110), Expect = 1e-18 Identities = 102/130 (78%), Gaps = 6/130 (5%) Strand=Plus/Plus Query 448 CTCCGACGGATTGTAGGCACATGG--TTTCAGGTACT--ATTTCACTCCCCGCCAGGGGT 503 || |||| |||||| ||||| | | |||||| || ||| |||| |||| ||||| Sbjct 38799215 CTTCGACTGATTGTT--CACATCGGATCTCAGGTTCTCTATTGCACTTCCCGATTGGGGT 38799272 Query 504 ACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCT 563 ||||||||||||||||| ||||||| || |||||||||||| |||| || ||||||| Sbjct 38799273 TCTTTTCACCTTTCCCTCGCGGTACTCGTACGCTATCGGTCATTTAGGAATACTTAGGCT 38799332 Query 564 TAACGGGTGG 573 || |||||| Sbjct 38799333 TAGAGGGTGG 38799342 Score = 86.0 bits (94), Expect = 2e-14 Identities = 120/167 (72%), Gaps = 1/167 (1%) Strand=Plus/Plus Query 85 TGTGGGCC-CCCTAGACCATCCAGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCAC 143 || ||||| |||| | |||| ||||||||||||| || | ||| ||| | || Sbjct 38798859 TGGGGGCCACCCTTGTCCATAGAGTGCTCTACCTCGGGCCATCGACATCATACGGTCTAC 38798918 Query 144 CTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATC 203 |||| ||| | ||| |||||||||| | ||| ||||||||||||||||| | Sbjct 38798919 TGAAATAGATTATGCGGAAAACCAGCTATATATGATCTTGGTTGGCCTTTCACCCCTAGC 38798978 Query 204 CACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCA 250 |||| ||||||||| | ||| | || || |||||||| || |||| Sbjct 38798979 CACAAGTCATCCCCGTATTTTGCCACATATGTGGGTTCATTCATCCA 38799025 Score = 82.4 bits (90), Expect = 3e-13 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 181 TTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTT 240 ||| ||||||||||||||||| ||||| ||||||||| | ||| | || || ||||||| Sbjct 30351884 TTGGTTGGCCTTTCACCCCTAGCCACAAGTCATCCCCGTATTTTGCCACATACGTGGGTT 30351943 Query 241 CGGTCCTCCA 250 |||||||||| Sbjct 30351944 CGGTCCTCCA 30351953 >seq1 Length=42145699 Score = 82.4 bits (90), Expect = 3e-13 Identities = 116/158 (73%), Gaps = 4/158 (3%) Strand=Plus/Plus Query 135 ACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTC 194 ||||| || ||||| ||||| || |||||||||| | | ||| || ||||||| Sbjct 13914483 ACGCTCTACATAAATAAATTTCACTGAAAACCAGCTATATCTCATCTTGGTTTGCCTTTC 13914542 Query 195 ACCCCTATCCACAGGTCATCCCCTCAGTTTTCAAC-CTA-AGTGGGTTCGGTCCTCCACG 252 ||||||| ||||| ||||| |||| | ||| | || || |||||||| |||||||| | Sbjct 13914543 ACCCCTAGCCACAAGTCAT-CCCTTATTTTGCCACAATATCGTGGGTTCAGTCCTCCAAG 13914601 Query 253 CGGTCTTA-CCCGCGCTTCAACCTGCCCATGGATAGAT 289 | ||| | | ||||||||| | ||||| ||||| Sbjct 13914602 GCATGTTAGAGCTCTCTTCAACCTACTCATGGCTAGAT 13914639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817593874688