Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq337 203 8e-50 seq14 197 3e-48 seq12 111 4e-22 seq3 89.7 1e-15 seq8 84.2 5e-14 seq5 73.4 1e-10 >seq337 Length=135516 Score = 203 bits (224), Expect = 8e-50 Identities = 307/422 (73%), Gaps = 21/422 (5%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | || |||||| ||||||||||| |||| ||||| | Sbjct 96459 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCTGCTTAGTT-TC 96403 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 | |||| ||| || |||| ||| ||||||||| ||| | || |||||| || | || Sbjct 96402 ATCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 96347 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCT-------ATTCGGTTA 181 ||| | ||||||| |||||||||||| ||||||| |||| | |||| ||| Sbjct 96346 GACAAT-CGCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCATTCCCTTA 96289 Query 182 AGCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAAC 241 | | ||||||| || |||||| | | |||| | ||| ||| |||| |||| | | Sbjct 96288 ACCAA-GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGATC 96230 Query 242 AAAGTGGGCTCCCACTGCTTGTACGCATA---CGGTTTCAGGATCTATTTCACTCCCCTC 298 | | ||||||||||||| || | |||||||| | ||||||||||| ||| | Sbjct 96229 ACTTTCCCCTCCCACTGCTTGGGAGCTCAGCACGGTTTCACGTTCTATTTCACTACCCAC 96170 Query 299 TCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTA 358 | |||||||||||| ||||||||||||||||||| ||| |||||||||| ||| |||| Sbjct 96169 TG-GGGGTTCTTTTCACCTTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTA 96111 Query 359 TTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418 |||||||||| | | |||||| | ||||| || || | ||||| || | ||||| Sbjct 96110 TTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACT 96051 Query 419 CG 420 || Sbjct 96050 CG 96049 Score = 203 bits (224), Expect = 8e-50 Identities = 307/422 (73%), Gaps = 21/422 (5%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | || |||||| ||||||||||| |||| ||||| | Sbjct 118961 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCTGCTTAGTT-TC 119017 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 | |||| ||| || |||| ||| ||||||||| ||| | || |||||| || | || Sbjct 119018 ATCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 119073 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCT-------ATTCGGTTA 181 ||| | ||||||| |||||||||||| ||||||| |||| | |||| ||| Sbjct 119074 GACAAT-CGCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCATTCCCTTA 119131 Query 182 AGCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAAC 241 | | ||||||| || |||||| | | |||| | ||| ||| |||| |||| | | Sbjct 119132 ACCAA-GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGATC 119190 Query 242 AAAGTGGGCTCCCACTGCTTGTACGCATA---CGGTTTCAGGATCTATTTCACTCCCCTC 298 | | ||||||||||||| || | |||||||| | ||||||||||| ||| | Sbjct 119191 ACTTTCCCCTCCCACTGCTTGGGAGCTCAGCACGGTTTCACGTTCTATTTCACTACCCAC 119250 Query 299 TCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTA 358 | |||||||||||| ||||||||||||||||||| ||| |||||||||| ||| |||| Sbjct 119251 TG-GGGGTTCTTTTCACCTTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTA 119309 Query 359 TTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418 |||||||||| | | |||||| | ||||| || || | ||||| || | ||||| Sbjct 119310 TTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACT 119369 Query 419 CG 420 || Sbjct 119370 CG 119371 >seq14 Length=147140 Score = 197 bits (218), Expect = 3e-48 Identities = 306/422 (73%), Gaps = 24/422 (6%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | || |||||| ||||||||||| |||| ||||| | Sbjct 63859 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCTGCTTAGT--TC 63914 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 | |||| ||| || |||| ||| ||||||||| ||| | || |||||| || | || Sbjct 63915 ATCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 63970 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCT-------ATTCGGTTA 181 ||| ||||||| |||||||||||| ||||||| |||| | |||| ||| Sbjct 63971 GACAT--CGCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCATTCCCTTA 64027 Query 182 AGCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAAC 241 | | ||||||| || |||||| | | |||| | ||| ||| |||| |||| | | Sbjct 64028 ACCAA-GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGATC 64086 Query 242 AAAGTGGGCTCCCACTGCTTGTACGCATA---CGGTTTCAGGATCTATTTCACTCCCCTC 298 | | ||||||||||||| || | |||||||| | ||||||||||| ||| | Sbjct 64087 ACTTTCCCCTCCCACTGCTTGGGAGCTCAGCACGGTTTCACGTTCTATTTCACTACCCAC 64146 Query 299 TCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTA 358 | |||||||||||| ||||||||||||||||||| ||| |||||||||| ||| |||| Sbjct 64147 TG-GGGGTTCTTTTCACCTTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAG-AGTA 64204 Query 359 TTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418 |||||||||| | | |||||| | ||||| || || | ||||| || | ||||| Sbjct 64205 TTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACT 64264 Query 419 CG 420 || Sbjct 64265 CG 64266 >seq12 Length=360304 Score = 111 bits (122), Expect = 4e-22 Identities = 104/130 (80%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCTTTT 312 |||| |||| ||||| | | ||||| ||| ||| |||||||| | ||||||||||| Sbjct 566 ACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCCCGATT-GGGGTTCTTTT 624 Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGG 372 | |||||||||||||||||| || | |||||||||| | || | || |||| ||| |||| Sbjct 625 CACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTAGAGG 684 Query 373 ATGGTCCCCC 382 ||||||||| Sbjct 685 GTGGTCCCCC 694 Score = 111 bits (122), Expect = 4e-22 Identities = 104/130 (80%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCTTTT 312 |||| |||| ||||| | | ||||| ||| ||| |||||||| | ||||||||||| Sbjct 132602 ACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCCCGATT-GGGGTTCTTTT 132660 Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGG 372 | |||||||||||||||||| || | |||||||||| | || | || |||| ||| |||| Sbjct 132661 CACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTAGAGG 132720 Query 373 ATGGTCCCCC 382 ||||||||| Sbjct 132721 GTGGTCCCCC 132730 >seq3 Length=50651951 Score = 89.7 bits (98), Expect = 1e-15 Identities = 99/130 (76%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCTTTT 312 |||| |||| | ||| | | ||||| ||| ||| |||| ||| | ||||||||||| Sbjct 38799220 ACTGATTGTTCACATCGGATCTCAGGTTCTCTATTGCACTTCCCGATT-GGGGTTCTTTT 38799278 Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGG 372 | |||||||||| ||||||| || | |||||||||| | || | || |||| ||| |||| Sbjct 38799279 CACCTTTCCCTCGCGGTACTCGTACGCTATCGGTCATTTAGGAATACTTAGGCTTAGAGG 38799338 Query 373 ATGGTCCCCC 382 ||| | ||| Sbjct 38799339 GTGGACTCCC 38799348 >seq8 Length=40689132 Score = 84.2 bits (92), Expect = 5e-14 Identities = 226/331 (68%), Gaps = 21/331 (6%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | || |||||| |||| ||||| |||| ||||| | Sbjct 13627848 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCAATTCGGACCTCTGCTTAGTT-TC 13627904 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 | |||| ||| || ||| || ||||||||| || | ||| ||||| || | || Sbjct 13627905 ATCCAAGCTT-CATCCTAGTCAG-GGATAGATCACCTAGGTTT-GGGTCCATAAGC-AGT 13627960 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCT-------ATTCGGTTA 181 ||| | | ||||| |||||||||||| | ||| || | | |||| ||| Sbjct 13627961 GACAAT-CACCCTATGAAGACTCGCTTT-CAATACAGCTTCAGTGGGTTCCATTCCCTTA 13628018 Query 182 AGCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAAC 241 | | |||| || || |||||| | | |||| | ||| | | |||| |||| | | Sbjct 13628019 ACCAA-GCCATTGCCTATGAGTCGCCGGCTCATTCTTCAACACGCACGCGGTCAGAGATC 13628077 Query 242 AAAGTGGGCTCCCACTGCTTGTACGCATA---CGGTTTCAGGATCTATTTCACTCCCCTC 298 | | ||||||||||||| || | | |||||| | ||||||||||| ||| | Sbjct 13628078 ACTTTTCCCTCCCACTGCTTGGGAGCTCAGCACAGTTTCATGTTCTATTTCACTACCCAC 13628137 Query 299 TCCGGGGTTCTTTTCGCCTTTCCCTCACGGT 329 | |||||||||||| ||||||||||||||| Sbjct 13628138 TG-GGGGTTCTTTTCACCTTTCCCTCACGGT 13628167 >seq5 Length=47252588 Score = 73.4 bits (80), Expect = 1e-10 Identities = 55/65 (85%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364 ||||||||| ||||||||| ||||||| |||| |||||| || ||| | ||||||||| Sbjct 15337657 GTTCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGATCTCTCACTTGTATTTAGC 15337716 Query 365 CTTGG 369 ||||| Sbjct 15337717 CTTGG 15337721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241595815808