Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq337 219 8e-55 seq14 215 1e-53 seq2 188 1e-45 seq9 185 2e-44 seq12 136 8e-30 seq5 107 4e-21 >seq337 Length=135516 Score = 219 bits (242), Expect = 8e-55 Identities = 233/305 (76%), Gaps = 18/305 (6%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || ||||||||||||||||||||| Sbjct 92128 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 92069 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||| | || ||||| ||| Sbjct 92068 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 92009 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | ||| |||||| |||||| ||||||||||| |||||| | ||||||||| || || Sbjct 92008 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTTGG 91949 Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239 || ||| || || ||| ||||| | | || | ||||||||| Sbjct 91948 GCGGATTTCTCCTT------------TTGC--TCCTCAGCC--TACGGGGTATTAGCAAC 91905 Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299 |||||||| ||| |||| ||| || |||||||| || ||| ||||||||||||| || Sbjct 91904 CGTTTCCAGTTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTTCG 91846 Query 300 CCACT 304 ||||| Sbjct 91845 CCACT 91841 Score = 219 bits (242), Expect = 8e-55 Identities = 233/305 (76%), Gaps = 18/305 (6%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || ||||||||||||||||||||| Sbjct 123291 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 123350 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||| | || ||||| ||| Sbjct 123351 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 123410 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | ||| |||||| |||||| ||||||||||| |||||| | ||||||||| || || Sbjct 123411 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTTGG 123470 Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239 || ||| || || ||| ||||| | | || | ||||||||| Sbjct 123471 GCGGATTTCTCCTT------------TTGC--TCCTCAGCC--TACGGGGTATTAGCAAC 123514 Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299 |||||||| ||| |||| ||| || |||||||| || ||| ||||||||||||| || Sbjct 123515 CGTTTCCAGTTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTTCG 123573 Query 300 CCACT 304 ||||| Sbjct 123574 CCACT 123578 >seq14 Length=147140 Score = 215 bits (238), Expect = 1e-53 Identities = 232/305 (76%), Gaps = 18/305 (6%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || ||||| ||||||||||||||| Sbjct 68164 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCAATGCTGCCTCCCGTAG 68223 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||| | || ||||| ||| Sbjct 68224 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 68283 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | ||| |||||| |||||| ||||||||||| |||||| | ||||||||| || || Sbjct 68284 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTTGG 68343 Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239 || ||| || || ||| ||||| | | || | ||||||||| Sbjct 68344 GCGGATTTCTCCTT------------TTGC--TCCTCAGCC--TACGGGGTATTAGCAAC 68387 Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299 |||||||| ||| |||| ||| || |||||||| || ||| ||||||||||||| || Sbjct 68388 CGTTTCCAGTTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTTCG 68446 Query 300 CCACT 304 ||||| Sbjct 68447 CCACT 68451 >seq2 Length=49199997 Score = 188 bits (208), Expect = 1e-45 Identities = 226/305 (74%), Gaps = 18/305 (6%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || |||||||||||||||| |||| Sbjct 8821843 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCAGTAG 8821784 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 |||| ||||| |||||||||||||| |||||| | ||| |||||| | || | || ||| Sbjct 8821783 GAGTGTGGGCAGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGATAATGAT 8821724 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | | |||||| |||||| ||||||||||| |||||| | ||||||||| || || Sbjct 8821723 GATGGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTTGG 8821664 Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239 || ||| || || ||| ||||| | | || | ||||||||| Sbjct 8821663 GCGGATTTCTCCTT------------TTGC--TCCTCAGCC--TACGGGGTATTAGCAAC 8821620 Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299 |||||||| ||| |||| ||| || |||||||| || ||| ||||||||||||| || Sbjct 8821619 CGTTTCCAGTTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTTCG 8821561 Query 300 CCACT 304 ||||| Sbjct 8821560 CCACT 8821556 >seq9 Length=58970307 Score = 185 bits (204), Expect = 2e-44 Identities = 227/305 (74%), Gaps = 20/305 (7%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| ||||||| |||| |||||||| || || ||||||||||||||||||||| Sbjct 32060507 GGCATTGCTCCATCAGGCTTTCACCCATTGTAGAAAATTCCCCACTGCTGCCTCCCGTAG 32060448 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 || |||||||||||||| ||||||| |||||| | ||| |||||| | || ||||| ||| Sbjct 32060447 GAATCTGGGCCGTGTCTTAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 32060388 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | || |||||| |||||| |||||| |||| |||||| | || |||||| || || Sbjct 32060387 CATCACCTTGGTAAGCTATTGCCTCACC-ACTAGCTAATCAGACGTGAGCCC-TCCTTGG 32060330 Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239 || ||| || || ||| ||||| | | || | ||||||||| Sbjct 32060329 GCAGATTTCTCCTT------------TTGC--TCCTCAGCC--TACGGGGTATTAGCAAC 32060286 Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299 | |||||| ||| |||| ||| || |||||||| || ||| |||||||||| || || Sbjct 32060285 CATTTCCAGTTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCTGTTCG 32060227 Query 300 CCACT 304 ||||| Sbjct 32060226 CCACT 32060222 Score = 105 bits (116), Expect = 1e-20 Identities = 115/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| ||| || |||| | ||| || ||| || ||||||||||||| ||| | |||||| Sbjct 39241320 GCTGGATCGGGCTTTCGCTCATCGTCCAAGATTCCCCACTGCTGCCCCCCATGGGAGTCC 39241261 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||||| ||||||||||||| ||||| | ||| || || | |||| ||| | || Sbjct 39241260 GGGCCATGTCTCAGTCCCAGTGTGGTTGATCATCCGAAAAGACTAGCTAAGCATCATTGG 39241201 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAAT 159 |||||| | ||| || |||||||||||||| Sbjct 39241200 CTTGGTAAACCTTTACCTGACCAACTACCTAAT 39241168 >seq12 Length=360304 Score = 136 bits (150), Expect = 8e-30 Identities = 122/153 (80%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| ||| || |||| |||||||| ||| || ||||||||||||| ||||| |||||| Sbjct 301338 GCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCC 301397 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||||||||||||||||||| |||||| | ||| || || || |||| ||| | || Sbjct 301398 GGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGG 301457 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAAT 159 |||||| || ||| || |||||||||||||| Sbjct 301458 CTTGGTCAGCCTTTACCTGACCAACTACCTAAT 301490 >seq5 Length=47252588 Score = 107 bits (118), Expect = 4e-21 Identities = 125/169 (74%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | |||| |||| ||| || | || || ||||||||||||||||| || Sbjct 39408763 GGCATTGCTCCGTCAGACTTTCGTCCAATGCGGAAAATTCCCCACTGCTGCCTCCCATAA 39408822 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 || || ||||| ||||||| ||||| |||| | ||| |||||| || ||||| || Sbjct 39408823 GAATCCGGGCCATGTCTCATTCCCACTGTGCCTAATCATCCTCTCGTACCAGCTACTTAT 39408882 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAG 169 | || | |||| |||||| |||||||||| |||||| | | |||| Sbjct 39408883 CATCATCATGGTAAGCTATTGCCTCACCAACTTGCTAATCAGGCACGAG 39408931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998396635392