Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq337 205 2e-50 seq14 197 3e-48 seq8 161 2e-37 seq12 156 1e-35 seq5 147 5e-33 seq1 113 1e-22 seq2 95.1 3e-17 seq3 93.3 1e-16 >seq337 Length=135516 Score = 205 bits (226), Expect = 2e-50 Identities = 297/409 (73%), Gaps = 18/409 (4%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | | Sbjct 97075 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 97016 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 |||| |||||| | |||| | | |||||| |||| | || |||||| ||| Sbjct 97015 GAGGAAACCTTGGGTTTTCGGGGCATTGGATTCTCACCAATGTTTTCGTTACTCAAGCCG 96956 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177 ||||||| || ||| || || ||| | | | | || ||||| || || | | Sbjct 96955 ACATTCTCGCTTCCGCTTCG--TCGACCCC-CGCTTTCGCGTTTGCTTC-CCTCTAAGGC 96900 Query 178 G--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231 | ||||||||||||| | || ||| | ||||||||||||| ||| |||| | Sbjct 96899 GGAACGCTCCCCTACCGATGCATTTTGACA---TCCCACAGCTTCGGCAGATCGCTTA-G 96844 Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291 ||||| | ||| || |||| | || || ||||||||||||||||||||||| ||| Sbjct 96843 CCCCGTT-CATCTTCAGCGCAAGGGCGCTCGATCAGTGAGCTATTACGCACTCTTTAAAG 96785 Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351 | |||||||||| | || |||||||||| ||||| ||| | |||| |||||| ||||| Sbjct 96784 GGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTTTGCACCCCCACCTCCTTTATCACTG 96725 Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || || |||||||||||||||| ||||| ||||||||||||||||| Sbjct 96724 AGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 96676 Score = 205 bits (226), Expect = 2e-50 Identities = 297/409 (73%), Gaps = 18/409 (4%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | | Sbjct 118345 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 118404 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 |||| |||||| | |||| | | |||||| |||| | || |||||| ||| Sbjct 118405 GAGGAAACCTTGGGTTTTCGGGGCATTGGATTCTCACCAATGTTTTCGTTACTCAAGCCG 118464 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177 ||||||| || ||| || || ||| | | | | || ||||| || || | | Sbjct 118465 ACATTCTCGCTTCCGCTTCG--TCGACCCC-CGCTTTCGCGTTTGCTTC-CCTCTAAGGC 118520 Query 178 G--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231 | ||||||||||||| | || ||| | ||||||||||||| ||| |||| | Sbjct 118521 GGAACGCTCCCCTACCGATGCATTTTGACA---TCCCACAGCTTCGGCAGATCGCTTA-G 118576 Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291 ||||| | ||| || |||| | || || ||||||||||||||||||||||| ||| Sbjct 118577 CCCCGTT-CATCTTCAGCGCAAGGGCGCTCGATCAGTGAGCTATTACGCACTCTTTAAAG 118635 Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351 | |||||||||| | || |||||||||| ||||| ||| | |||| |||||| ||||| Sbjct 118636 GGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTTTGCACCCCCACCTCCTTTATCACTG 118695 Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || || |||||||||||||||| ||||| ||||||||||||||||| Sbjct 118696 AGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 118744 >seq14 Length=147140 Score = 197 bits (218), Expect = 3e-48 Identities = 296/408 (73%), Gaps = 18/408 (4%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||| ||||| || ||||||||| | ||| ||| | | Sbjct 63250 CGACTACGCCTTTCGGCCTGATCTTAGC-CCTGACTCACCCTCCGTGGACGAACCTTGCG 63308 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 |||| |||||| | |||| | | |||||| |||| | || |||||| ||| Sbjct 63309 GAGGAAACCTTGGGTTTTCGGGGCATTGGATTCTCACCAATGTTTTCGTTACTCAAGCCG 63368 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177 ||||||| || ||| || || ||| | | | | || ||||| || || | | Sbjct 63369 ACATTCTCGCTTCCGCTTCG--TCGACCCC-CGCTTTCGCGTTTGCTTC-CCTCTAAGGC 63424 Query 178 G--ACGCTCCCCTACCCAACCAC---ACAGGTTGCCACAGCTTCGGCGGATAACTTAAGC 232 | ||||||||||||| | || ||| | ||||||||||||| ||| |||| || Sbjct 63425 GGAACGCTCCCCTACCGATGCATTTGACA---TCCCACAGCTTCGGCAGATCGCTTA-GC 63480 Query 233 CCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGG 292 |||| | ||| || |||| | || || ||||||||||||||||||||||| |||| Sbjct 63481 CCCGTT-CATCTTCAGCGCAAGGGCGCTCGATCAGTGAGCTATTACGCACTCTTTAAAGG 63539 Query 293 ATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGA 352 |||||||||| | || |||||||||| ||||| ||| | |||| |||||| |||||| Sbjct 63540 GTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTTTGCACCCCCACCTCCTTTATCACTGA 63599 Query 353 GTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 | || |||||||||||||||| ||||| ||||||||||||||||| Sbjct 63600 GCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 63647 >seq8 Length=40689132 Score = 161 bits (178), Expect = 2e-37 Identities = 285/407 (70%), Gaps = 14/407 (3%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| |||||| |||||| || ||||||||| | ||||||| | Sbjct 13627232 CGACTACGCCTTTCGGCCAGATCTTAGGCCCTGACTCACCCTCTGTGGACAAACCTTGTG 13627291 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 |||| |||||||| || | | | |||||| |||| | || |||||| ||| Sbjct 13627292 GAGGAAACCTTGGATTTTCAGGGCATTGGATTCTCACCATTGTTTTCGTTACTCAAGCCG 13627351 Query 120 GCATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACACG- 178 ||||||| || ||| || ||| | | | | | ||||| | || | | Sbjct 13627352 ACATTCTCTCTTCCATTTCGTCAACCCC-CGCTTTCGTGTTTGCTTC-CATCTAAGGTGG 13627409 Query 179 -ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAGCC 233 ||||||||||| | || ||| | ||||||||||| | ||| |||| ||| Sbjct 13627410 AACGCTCCCCTATTGATGCATTTTGACA---TCCCACAGCTTCGACAGATCCCTTA-GCC 13627465 Query 234 CCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGA 293 || | ||| || |||| | || | ||||||||||||||||| |||| |||| Sbjct 13627466 CCATT-CATCTTCAGCGCAAGGGCGCTCAATCAGTGAGCTATTACGCATGCTTTAAAGGG 13627524 Query 294 TGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAG 353 ||| |||||| | || ||||||||| ||||| ||| |||||| ||||||| ||||||| Sbjct 13627525 TGGTTGCTTCTAGGCAAACCTCCTGTCTGTCTTTGCACCTCCACCTCCTTTCTCACTGAG 13627584 Query 354 TCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 | || |||||||||||||||| |||||| |||||||||||||||| Sbjct 13627585 TGGTCATTTAGGGGCCTTAGCTGGTGATCTAGGCTGTTTCCCTCTCG 13627631 >seq12 Length=360304 Score = 156 bits (172), Expect = 1e-35 Identities = 152/193 (79%), Gaps = 7/193 (4%) Strand=Plus/Plus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268 ||||||| | || |||| ||||| | ||||| |||| || ||| || ||||||| Sbjct 131965 GCTTCGGTGAATCACTTGAGCCCTGAGACATTTTCGGTGCCATGGAG---CTAGACCAGT 132021 Query 269 GAGCTATTACGCACTCTTTCAA-GGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTAC 327 |||||||||||| |||| || ||||||||||||||||||| |||||||||||||| | Sbjct 132022 GAGCTATTACGCTTTCTTCAAAAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTGTCATC 132081 Query 328 GCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGC 387 || ||| |||||| ||||| ||| | ||||||| ||||||| | ||||||||| Sbjct 132082 GCTCGATCACTTCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCGTACGATCTGGGC 132141 Query 388 TGTTTCCCTCTCG 400 ||||||||||||| Sbjct 132142 TGTTTCCCTCTCG 132154 Score = 122 bits (134), Expect = 2e-25 Identities = 96/115 (83%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 286 TTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTC 345 |||||||||||||||||||||||| |||||||||||||| ||| ||| |||||| Sbjct 4 TTCAAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTGTCATCGCTCGATCACTTCCTTTT 63 Query 346 CCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 ||||| ||| | ||||||| ||||||| | |||||||||||||||||||||| Sbjct 64 CCACTAAGTGATTGCTTAGGGACCTTAGCGTACGATCTGGGCTGTTTCCCTCTCG 118 >seq5 Length=47252588 Score = 147 bits (162), Expect = 5e-33 Identities = 116/139 (83%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 262 GACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTT 321 || ||||||||||||||||||| ||| ||||||||||||||| | || |||||||||| | Sbjct 42487593 GATCAGTGAGCTATTACGCACTGTTTAAAGGATGGCTGCTTCTAGGCAAACCTCCTGGCT 42487534 Query 322 GTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGAT 381 |||| ||| | |||| |||||| ||| ||| || |||||||||||||||| |||| Sbjct 42487533 GTCTTTGCACCCCCACCTCCTTTATCACCGAGCGGTCATTTAGGGGCCTTAGCTGGTGAT 42487474 Query 382 CTGGGCTGTTTCCCTCTCG 400 | ||| ||||||||||||| Sbjct 42487473 CCGGGATGTTTCCCTCTCG 42487455 >seq1 Length=42145699 Score = 113 bits (124), Expect = 1e-22 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 259 CTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTG 318 || ||||||||||||||| || | || ||||||||||||||||||||| ||||||| Sbjct 13914234 CTAGACCAGTGAGCTATTGTGCTTTGTTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTA 13914293 Query 319 GTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGAT 378 |||||| ||| ||| | |||| ||||| ||| | ||||| | ||||| | || Sbjct 13914294 GTTGTCATCGCTCGATCACTTTCTTTTCCACTAAGTGATTGCTTAGTGACCTTAACGTAT 13914353 Query 379 GATCTGGGCTGTTTCCCTCTCG 400 ||||| || ||||||||||||| Sbjct 13914354 GATCTAGGTTGTTTCCCTCTCG 13914375 >seq2 Length=49199997 Score = 95.1 bits (104), Expect = 3e-17 Identities = 140/196 (71%), Gaps = 28/196 (14%) Strand=Plus/Plus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC--GGAATCACTTGAC 264 ||| ||||||||| ||| |||| ||| | | ||| || | || ||| | || || Sbjct 40433916 CCATAGCTTCGGCAGATCGCTTA-GCCTTGTT-CATCTTCAGTGCAAGGA--CGCTCGAT 40433971 Query 265 CAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTC 324 |||||||||||||||||||||| |||| ||| |||||| | || ||||| |||| | || Sbjct 40433972 CAGTGAGCTATTACGCACTCTTCAAAGGGTGGTTGCTTCTAGGCAAACCTACTGGCTATC 40434031 Query 325 TACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTG 384 || | ||||| |||| | ||||||||||||||| ||||| | Sbjct 40434032 TATG------------------CACTG-GTCATC---TAGGGGCCTTAGCTGGTGATCCG 40434069 Query 385 GGCTGTTTCCCTCTCG 400 |||||||||||||||| Sbjct 40434070 GGCTGTTTCCCTCTCG 40434085 >seq3 Length=50651951 Score = 93.3 bits (102), Expect = 1e-16 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 259 CTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTG 318 || ||||||||||||||||||| |||| |||||||||| |||||||||| |||||||| Sbjct 38798657 CTAGACCAGTGAGCTATTACGCTTTCTTCAAAGGATGGCTACTTCCAAGCCCACCTCCTG 38798716 Query 319 GTTGTCTACGCAACTCCACATCCTTTCCCACTGAGT 354 || ||| ||| ||| |||||| ||| ||||| Sbjct 38798717 GTCGTCATCGCTCGATCACTTCCTTTTCCAATGAGT 38798752 Score = 73.4 bits (80), Expect = 9e-11 Identities = 76/97 (78%), Gaps = 2/97 (2%) Strand=Plus/Minus Query 305 AAGCCAA-CCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTA 363 ||||||| |||||||| | ||| ||| | |||| |||||| ||||||| || ||| Sbjct 4301901 AAGCCAAACCTCCTGGCTATCTTTGCACCCCCACCTCCTTTATCACTGAGCGGTCATTTA 4301842 Query 364 GGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 | | |||||| || ||||| || |||||||||||||| Sbjct 4301841 GAG-CCTTAGTTGGTGATCCGGACTGTTTCCCTCTCG 4301806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177596031488