Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq337 255 9e-66 seq14 244 2e-62 seq9 188 1e-45 seq12 181 2e-43 seq6 102 1e-19 >seq337 Length=135516 Score = 255 bits (282), Expect = 9e-66 Identities = 221/273 (81%), Gaps = 1/273 (0%) Strand=Plus/Minus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| |||| |||| |||||| |||||| |||| |||| ||| |||||| Sbjct 98537 GGTGGGCTTACTACTTATATGCTTTCAGCAGTTATCCTCTCCACACTTGGCTACCCAGCG 98478 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||| |||||||||| |||| |||||||||||||||||| Sbjct 98477 TTTACCGTAGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 98418 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || |||||||| |||||| ||||||||||||||| || Sbjct 98417 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACG 98358 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||||||||||||| ||| || | ||||||||||||||||||||||||||| ||| Sbjct 98357 ACGTTCTGAACCCAGCTCACGTACCGCATTAATGGGCGAACAGCCCAACCCTTGGAACCA 98298 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 || |||| ||||| | || |||||||||||| Sbjct 98297 CCTACAGCTCCAGGTGGCGAAGAGCCGACATCG 98265 Score = 255 bits (282), Expect = 9e-66 Identities = 221/273 (81%), Gaps = 1/273 (0%) Strand=Plus/Plus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| |||| |||| |||||| |||||| |||| |||| ||| |||||| Sbjct 116883 GGTGGGCTTACTACTTATATGCTTTCAGCAGTTATCCTCTCCACACTTGGCTACCCAGCG 116942 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||| |||||||||| |||| |||||||||||||||||| Sbjct 116943 TTTACCGTAGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 117002 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || |||||||| |||||| ||||||||||||||| || Sbjct 117003 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACG 117062 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||||||||||||| ||| || | ||||||||||||||||||||||||||| ||| Sbjct 117063 ACGTTCTGAACCCAGCTCACGTACCGCATTAATGGGCGAACAGCCCAACCCTTGGAACCA 117122 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 || |||| ||||| | || |||||||||||| Sbjct 117123 CCTACAGCTCCAGGTGGCGAAGAGCCGACATCG 117155 >seq14 Length=147140 Score = 244 bits (270), Expect = 2e-62 Identities = 218/272 (80%), Gaps = 1/272 (0%) Strand=Plus/Plus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCT 63 || |||||| |||| |||| |||||| |||||| |||| |||| ||| |||||| Sbjct 61798 GGTGGGCTTACTACTTATATGCTTTCAGCAGTTATCCTCTCCACACTTGGCTACCCAGCG 61857 Query 64 ATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTA 123 | | | ||| | ||||||| |||||||| | |||| ||||||||||||||||||| Sbjct 61858 TTTACCGTAGCACGATAACTGGTACACCAGAG-TGCGTCCTTCCCGGTCCTCTCGTACTA 61916 Query 124 AGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGA 183 ||| || ||||||||| || |||||||| |||||| ||||||||||||||| ||| Sbjct 61917 GGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACGA 61976 Query 184 CGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTA 243 ||||||||||||||||| ||| || | ||||||||||||||||||||||||||| ||| Sbjct 61977 CGTTCTGAACCCAGCTCACGTACCGCATTAATGGGCGAACAGCCCAACCCTTGGAACCAC 62036 Query 244 CTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 || |||| ||||| | || |||||||||||| Sbjct 62037 CTACAGCTCCAGGTGGCGAAGAGCCGACATCG 62068 Score = 122 bits (134), Expect = 1e-25 Identities = 129/169 (76%), Gaps = 1/169 (1%) Strand=Plus/Minus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| |||| |||| |||||| |||||| |||| |||| ||| |||||| Sbjct 42983 GGTGGGCTTACTACTTATATGCTTTCAGCAGTTATCCTCTCCACACTTGGCTACCCAGCG 42924 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||| |||||||||| |||| |||||||||||||||||| Sbjct 42923 TTTACCGTAGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 42864 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGA 171 | ||| || ||||||||| || |||||||| |||||| | |||| Sbjct 42863 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGACCCGA 42815 >seq9 Length=58970307 Score = 188 bits (208), Expect = 1e-45 Identities = 213/275 (77%), Gaps = 8/275 (3%) Strand=Plus/Plus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCT 63 || |||||| |||| |||| |||||| |||||| |||| |||| ||| |||||| Sbjct 40373279 GGTGGGCTTACTACTTATATGCTTTCAGCAGTTATCCTCTCCACACTTGGCTACCCAGCG 40373338 Query 64 ATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTA 123 | | | ||| | ||||||| |||||||| | |||| ||||| || |||||||||| Sbjct 40373339 TTTACCGTAGCACGATAACTGGTACACCAGAG-TGCGTCCTTCCCGATC-TCTCGTACTA 40373396 Query 124 AGGACAGCTCCTCTCAAATTTCCTACGCCCACGACG-GATAGGGACCG-AACTGTCTCGC 181 ||| || || |||||| || |||||||| ||| |||| |||| ||||||||| Sbjct 40373397 -GGAAAGGTC-TCTCAATGCTCTAACGCCCAC-ACGCGATATGGACTATAACTGTCTCTT 40373453 Query 182 GACGT-TCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGAC 240 ||||| |||||||||||||| ||| || | ||||||||||||||||||||||||||| || Sbjct 40373454 GACGTCTCTGAACCCAGCTCACGTACCGCATTAATGGGCGAACAGCCCAACCCTTGGAAC 40373513 Query 241 CTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 | || |||| ||||| | || |||||||||||| Sbjct 40373514 CACCTACAGCTCCAGGTGGCGAAGAGCCGACATCG 40373548 Score = 132 bits (146), Expect = 8e-29 Identities = 99/116 (85%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 160 GATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGC 219 |||||| ||| ||||||||| ||||||||| |||||| ||| ||| || |||| || ||| Sbjct 44984675 GATAGGAACCAAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTCATCGGC 44984616 Query 220 GAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||||| || |||||||||||||| ||||| |||||||||| || ||| |||||||| Sbjct 44984615 GAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATGAGTCGACATCG 44984560 >seq12 Length=360304 Score = 181 bits (200), Expect = 2e-43 Identities = 193/252 (77%), Gaps = 6/252 (2%) Strand=Plus/Plus Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88 |||| || | || | | ||||||||| ||| || ||| |||||| ||||| ||| | Sbjct 129893 CAGCAGTTCTTCCATACCAACTTAGCTGCCCGGCGCTGCTATTGGCATAACAACCGGTAC 129952 Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCC-- 146 |||| ||||| ||| ||| |||||||||||||| || ||||||| || | ||| Sbjct 129953 ACCATAGGTTGACCCAACCCAGTCCTCTCGTACTAGGGTTGGCTCCTCGCAGTTCTCCCT 130012 Query 147 --TACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACG-TTCTGAACCCAGCTCGCG 203 || || ||| |||||| ||||||||||||| ||||| |||| |||||| ||| || Sbjct 130013 TTAACACCAACGGTAGATAGGAACCGAACTGTCTCACGACGTTTCTAAACCCAACTCACG 130072 Query 204 TGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGAC 263 | || |||| || |||| ||| || |||||||||||||| ||||| |||||||||| || Sbjct 130073 TACCACTTTCATCGGCG-ACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGAT 130131 Query 264 GAGCCGACATCG 275 ||| |||||||| Sbjct 130132 GAGTCGACATCG 130143 >seq6 Length=36014550 Score = 102 bits (112), Expect = 1e-19 Identities = 143/199 (72%), Gaps = 5/199 (3%) Strand=Plus/Plus Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88 |||| || | || | | ||||||| | ||| | ||| | |||| ||||| ||| | Sbjct 25601555 CAGCAGTTCTTCCATACCAACTTAGTTGCCCGACGCTGCTATAGGCATAACAACCGGTAC 25601614 Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT- 147 |||| ||||| ||| ||| | |||||||||||| || ||||||| || | ||| Sbjct 25601615 ACCATAGGTTGACCCAACCCAGCCCTCTCGTACTAGGGTTGGCTCCTCGCAGTTCTCCCT 25601674 Query 148 ---ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGT 204 || || ||| |||||| ||||||||||||| |||| |||| |||||| ||| ||| Sbjct 25601675 TTAACACCAACGGTAGATAGGAACCGAACTGTCTCACGACATTCTAAACCCAACTCACGT 25601734 Query 205 GCCTCTTTAAT-GGGCGAA 222 || |||| || || |||| Sbjct 25601735 ACCACTTTCATCGGTCGAA 25601753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780797450932