Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq337 271 2e-70 seq14 266 8e-69 seq2 244 3e-62 seq9 228 2e-57 seq12 170 5e-40 seq5 122 2e-25 seq7 82.4 2e-13 >seq337 Length=135516 Score = 271 bits (300), Expect = 2e-70 Identities = 307/410 (75%), Gaps = 30/410 (7%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| |||||||| | | |||||||||| ||| | |||||||| |||||||| Sbjct 92159 TTGACGACCCGTAGGCCTTCCACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 92100 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || |||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 92099 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 92040 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||||| ||||||||| |||| |||||| ||| || ||| || | ||| Sbjct 92039 GGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCA 91980 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 ||||||||||| | | | | ||| | | | || | || || |||| Sbjct 91979 ACTAGCTAATCAGACGCGAGCCCCTCC--TTGGG-------CGGATTTCTCC--TTTTGC 91931 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 || | | | || | ||||||||| |||||||||||| ||| | ||||||| |||| Sbjct 91930 TCCTCAGCC--TACGGGGTATTAGCAACCGTTTCCAGTTGTTGTTCCCCTCCCAAGGGCA 91873 Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364 | ||| | | |||||||||||| ||||||| ||| || || |||| Sbjct 91872 GGTTCTTACGCGTTACTCACCCGTTCGCCACT------GGAAACACCA-----CTTC--- 91827 Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 ||||||||||||||||||||| || ||||||||||||||| ||||| Sbjct 91826 ---CCGTTCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 91780 Score = 271 bits (300), Expect = 2e-70 Identities = 307/410 (75%), Gaps = 30/410 (7%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| |||||||| | | |||||||||| ||| | |||||||| |||||||| Sbjct 123260 TTGACGACCCGTAGGCCTTCCACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 123319 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || |||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 123320 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 123379 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||||| ||||||||| |||| |||||| ||| || ||| || | ||| Sbjct 123380 GGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCA 123439 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 ||||||||||| | | | | ||| | | | || | || || |||| Sbjct 123440 ACTAGCTAATCAGACGCGAGCCCCTCC--TTGGG-------CGGATTTCTCC--TTTTGC 123488 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 || | | | || | ||||||||| |||||||||||| ||| | ||||||| |||| Sbjct 123489 TCCTCAGCC--TACGGGGTATTAGCAACCGTTTCCAGTTGTTGTTCCCCTCCCAAGGGCA 123546 Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364 | ||| | | |||||||||||| ||||||| ||| || || |||| Sbjct 123547 GGTTCTTACGCGTTACTCACCCGTTCGCCACT------GGAAACACCA-----CTTC--- 123592 Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 ||||||||||||||||||||| || ||||||||||||||| ||||| Sbjct 123593 ---CCGTTCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 123639 >seq14 Length=147140 Score = 266 bits (294), Expect = 8e-69 Identities = 306/410 (75%), Gaps = 30/410 (7%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| |||||||| | | |||||||||| ||| | |||||||| |||||||| Sbjct 68133 TTGACGACCCGTAGGCCTTCCACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 68192 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || |||||||| ||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 68193 GCGGAAAATTCCCCAATGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 68252 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||||| ||||||||| |||| |||||| ||| || ||| || | ||| Sbjct 68253 GGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCA 68312 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 ||||||||||| | | | | ||| | | | || | || || |||| Sbjct 68313 ACTAGCTAATCAGACGCGAGCCCCTCC--TTGGG-------CGGATTTCTCC--TTTTGC 68361 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 || | | | || | ||||||||| |||||||||||| ||| | ||||||| |||| Sbjct 68362 TCCTCAGCC--TACGGGGTATTAGCAACCGTTTCCAGTTGTTGTTCCCCTCCCAAGGGCA 68419 Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364 | ||| | | |||||||||||| ||||||| ||| || || |||| Sbjct 68420 GGTTCTTACGCGTTACTCACCCGTTCGCCACT------GGAAACACCA-----CTTC--- 68465 Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 ||||||||||||||||||||| || ||||||||||||||| ||||| Sbjct 68466 ---CCGTTCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 68512 >seq2 Length=49199997 Score = 244 bits (270), Expect = 3e-62 Identities = 301/410 (73%), Gaps = 30/410 (7%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| |||||||| | | |||||||||| ||| | |||||||| |||||||| Sbjct 8821874 TTGACGACCCGTAGGCCTTCCACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 8821815 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || ||||||||||||||||||| |||||||| ||| | |||||||||| ||||||| Sbjct 8821814 GCGGAAAATTCCCCACTGCTGCCTCCAGTAGGAGTGTGGGCAGTGTCTCAGTCCCAGTGT 8821755 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||||| |||||| || ||| | |||| ||| || ||| || | ||| Sbjct 8821754 GGCTGATCATCCTCTCGGACCAGATAATGATGATGGCCTTGGTAAGCTATTGCCTCACCA 8821695 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 ||||||||||| | | | | ||| | | | || | || || |||| Sbjct 8821694 ACTAGCTAATCAGACGCGAGCCCCTCC--TTGGG-------CGGATTTCTCC--TTTTGC 8821646 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 || | | | || | ||||||||| |||||||||||| ||| | ||||||| |||| Sbjct 8821645 TCCTCAGCC--TACGGGGTATTAGCAACCGTTTCCAGTTGTTGTTCCCCTCCCAAGGGCA 8821588 Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364 | ||| | | |||||||||||| ||||||| ||| || || |||| Sbjct 8821587 GGTTCTTACGCGTTACTCACCCGTTCGCCACT------GGAAACACCA-----CTTC--- 8821542 Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 ||||||||||||||||||||| || ||||||||||||||| ||||| Sbjct 8821541 ---CCGTTCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 8821495 >seq9 Length=58970307 Score = 228 bits (252), Expect = 2e-57 Identities = 292/398 (73%), Gaps = 32/398 (8%) Strand=Plus/Minus Query 17 AGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCC 76 |||||||| | | |||||||||| ||| |||||||||| | |||||||| || ||||| Sbjct 32060526 AGGCCTTCCACCTCCACGCGGCATTGCTCCATCAGGCTTTCACCCATTGTAGAAAATTCC 32060467 Query 77 CCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCC 136 ||||||||||||||||||||| ||||| |||||||| ||| |||||||||||| |||||| Sbjct 32060466 CCACTGCTGCCTCCCGTAGGAATCTGGGCCGTGTCTTAGTCCCAGTGTGGCTGATCATCC 32060407 Query 137 TCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATCC 196 |||| ||||||||| |||| || ||| ||| || ||| || | || ||||||||||| Sbjct 32060406 TCTCGGACCAGCTACTGATCATCACCTTGGTAAGCTATTGCCTCACC-ACTAGCTAATCA 32060348 Query 197 CATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGCGACGTT 256 | || | | ||| | | ||| || | | | |||| || | | | | Sbjct 32060347 GACGTGAG-CCCTCC--TTG-----GGC----AGATTTCTCCTTTTGCTCCTCAGCC--T 32060302 Query 257 ATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCCCAGACA 316 | | ||||||||| ||| |||||||| ||| | ||||||| ||||| ||| | | Sbjct 32060301 ACGGGGTATTAGCAACCATTTCCAGTTGTTGTTCCCCTCCCAAGGGCAGGTTCTTACGCG 32060242 Query 317 TTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGAC 376 ||||||||| || ||||||| ||| || || |||| ||||| ||| Sbjct 32060241 TTACTCACCTGTTCGCCACT------GGAAACACCA-----CTTC------CCGTTTGAC 32060199 Query 377 TTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 |||||||||||| || ||||||||||||||| ||||| Sbjct 32060198 TTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 32060161 Score = 138 bits (152), Expect = 3e-30 Identities = 147/193 (76%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 4 CTTTACAACCCGAA--GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCC 61 |||||||| | | | | ||||||||| |||||| || |||| ||| ||||| ||| | Sbjct 39241360 CTTTACAAGCGGCATTGCCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCTC 39241301 Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 121 || || ||| |||||||||||||||| ||| | |||||| || || ||||||||| |||| Sbjct 39241300 ATCGTCCAAGATTCCCCACTGCTGCCCCCCATGGGAGTCCGGGCCATGTCTCAGTCCCAG 39241241 Query 122 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCG 181 ||||| || |||||| |||| ||||| | ||| | | || ||| || ||||| Sbjct 39241240 TGTGGTTGATCATCCGAAAAGACTAGCTAAGCATCATTGGCTTGGTAAACCTTTACCTGA 39241181 Query 182 CCAACTAGCTAAT 194 ||||||| ||||| Sbjct 39241180 CCAACTACCTAAT 39241168 >seq12 Length=360304 Score = 170 bits (188), Expect = 5e-40 Identities = 154/193 (80%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 4 CTTTACAACCCGAA--GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCC 61 |||||||| | | | | ||||||||| |||||| || |||| ||| ||||| ||||| Sbjct 301298 CTTTACAAGCGGCATTGCCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCC 301357 Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 121 ||||| ||| |||||||||||||||| ||||| |||||| || |||||||||||| |||| Sbjct 301358 ATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAG 301417 Query 122 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCG 181 |||||||| |||||| |||||||||| | ||| | | || ||| ||| ||||| Sbjct 301418 TGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGA 301477 Query 182 CCAACTAGCTAAT 194 ||||||| ||||| Sbjct 301478 CCAACTACCTAAT 301490 >seq5 Length=47252588 Score = 122 bits (134), Expect = 2e-25 Identities = 136/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 14 CGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATAT 73 || |||||||| | ||| |||||| ||| | |||| ||| || ||| || | || || Sbjct 39408741 CGTAGGCCTTCCATCTCCACACGGCATTGCTCCGTCAGACTTTCGTCCAATGCGGAAAAT 39408800 Query 74 TCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCA 133 |||||||||||||||||| || || || || || ||||||| | ||| |||| || ||| Sbjct 39408801 TCCCCACTGCTGCCTCCCATAAGAATCCGGGCCATGTCTCATTCCCACTGTGCCTAATCA 39408860 Query 134 TCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAA 193 ||||||| |||||||| ||| || | ||| || ||| || | |||||| ||||| Sbjct 39408861 TCCTCTCGTACCAGCTACTTATCATCATCATGGTAAGCTATTGCCTCACCAACTTGCTAA 39408920 Query 194 TC 195 || Sbjct 39408921 TC 39408922 >seq7 Length=35964315 Score = 82.4 bits (90), Expect = 2e-13 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 76 CCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATC 135 |||| |||||||||||||| |||| || ||||||||| ||||| |||||||| ||||| Sbjct 31552294 CCCATTGCTGCCTCCCGTAAGAGTTGGGGTCGTGTCTCATTTCCATTGTGGCTGATCATC 31552353 Query 136 CTCTCAGACC 145 ||||| |||| Sbjct 31552354 CTCTCGGACC 31552363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222395880512