Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq337 333 8e-89 seq14 329 1e-87 seq2 306 1e-80 seq9 205 3e-50 seq6 167 7e-39 seq12 161 3e-37 seq5 129 2e-27 seq7 77.0 1e-11 >seq337 Length=135516 Score = 333 bits (368), Expect = 8e-89 Identities = 281/343 (82%), Gaps = 3/343 (1%) Strand=Plus/Plus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||| ||| || |||||||||||||| |||||||||| | Sbjct 91962 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGT 92021 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | |||||| ||||| |||||| ||| |||||||||||| ||| ||||||||||||||||| Sbjct 92022 CCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAG 92081 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||||||||| || | |||||||| ||||||||| | ||||| |||||||| | || Sbjct 92082 CAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTGGA 92141 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAG--ATAATGACGGTACTTGAGGAGG 397 |||||| |||||||| || ||| | ||| |||| | |||||||||| |||||| Sbjct 92142 AGGCCTACGGGTCGTCAACTTCTTTTCTCGGAGAAGAAACAATGACGGTATCTGAGGAAT 92201 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 |||| ||||||||| ||||||||||||||||||| || ||| || ||||||||||| Sbjct 92202 AAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTATCCG 92261 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||| | | |||||||||| || |||||||| || | ||||| Sbjct 92262 GAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTC 92303 Score = 333 bits (368), Expect = 8e-89 Identities = 281/343 (82%), Gaps = 3/343 (1%) Strand=Plus/Minus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||| ||| || |||||||||||||| |||||||||| | Sbjct 123457 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGT 123398 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | |||||| ||||| |||||| ||| |||||||||||| ||| ||||||||||||||||| Sbjct 123397 CCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAG 123338 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||||||||| || | |||||||| ||||||||| | ||||| |||||||| | || Sbjct 123337 CAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTGGA 123278 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAG--ATAATGACGGTACTTGAGGAGG 397 |||||| |||||||| || ||| | ||| |||| | |||||||||| |||||| Sbjct 123277 AGGCCTACGGGTCGTCAACTTCTTTTCTCGGAGAAGAAACAATGACGGTATCTGAGGAAT 123218 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 |||| ||||||||| ||||||||||||||||||| || ||| || ||||||||||| Sbjct 123217 AAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTATCCG 123158 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||| | | |||||||||| || |||||||| || | ||||| Sbjct 123157 GAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTC 123116 >seq14 Length=147140 Score = 329 bits (364), Expect = 1e-87 Identities = 280/343 (82%), Gaps = 3/343 (1%) Strand=Plus/Minus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||| ||| || |||||||||||||| |||||||||| | Sbjct 68330 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGT 68271 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | |||||| ||||| |||||| ||| |||||||||||| ||| ||||||||||||||||| Sbjct 68270 CCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAG 68211 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 || |||||||| || | |||||||| ||||||||| | ||||| |||||||| | || Sbjct 68210 CATTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTGGA 68151 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAG--ATAATGACGGTACTTGAGGAGG 397 |||||| |||||||| || ||| | ||| |||| | |||||||||| |||||| Sbjct 68150 AGGCCTACGGGTCGTCAACTTCTTTTCTCGGAGAAGAAACAATGACGGTATCTGAGGAAT 68091 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 |||| ||||||||| ||||||||||||||||||| || ||| || ||||||||||| Sbjct 68090 AAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTATCCG 68031 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||| | | |||||||||| || |||||||| || | ||||| Sbjct 68030 GAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTC 67989 >seq2 Length=49199997 Score = 306 bits (338), Expect = 1e-80 Identities = 275/343 (80%), Gaps = 3/343 (1%) Strand=Plus/Plus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||| ||| || |||||||||||| | |||| || | | Sbjct 8821677 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCCATCATCATTATCTGGT 8821736 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | |||||| ||||| |||||| ||| |||||||||| | ||| |||||||| |||||||| Sbjct 8821737 CCGAGAGGATGATCAGCCACACTGGGACTGAGACACTGCCCACACTCCTACTGGAGGCAG 8821796 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||||||||| || | |||||||| ||||||||| | ||||| |||||||| | || Sbjct 8821797 CAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTGGA 8821856 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAG--ATAATGACGGTACTTGAGGAGG 397 |||||| |||||||| || ||| | ||| |||| | |||||||||| |||||| Sbjct 8821857 AGGCCTACGGGTCGTCAACTTCTTTTCTCGGAGAAGAAACAATGACGGTATCTGAGGAAT 8821916 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 |||| ||||||||| ||||||||||||||||||| || ||| || ||||||||||| Sbjct 8821917 AAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTATCCG 8821976 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||| | | |||||||||| || |||||||| || | ||||| Sbjct 8821977 GAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTC 8822018 >seq9 Length=58970307 Score = 205 bits (226), Expect = 3e-50 Identities = 247/333 (74%), Gaps = 11/333 (3%) Strand=Plus/Plus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 ||||| |||||||| |||||| || |||||||| | | ||| |||| || || Sbjct 39241168 ATTAGGTAGTTGGTCAGGTAAAGGTTTACCAAGCCAATGATGCTTAGCTAGTCTTTTCGG 39241227 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287 ||||| ||||| ||| ||||||||| || || ||||| | ||| ||||||||||||| Sbjct 39241228 ATGATCAACCACACTGGGACTGAGACATGGCCCGGACTCCCATGGGGGGCAGCAGTGGGG 39241287 Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC--T 345 ||| ||| || ||| || |||||| ||| |||||| |||||||| || ||||| | | Sbjct 39241288 AATCTTGGACGATGAGCGAAAGCCCGATCCAGCAATATCGCGTGAGTGAAGAAGGGCAAT 39241347 Query 346 TCGGGTCGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTTGAGGAGGAAGCCC 403 | | | |||||||||| || || | | ||| ||||| ||| ||||| ||||||| Sbjct 39241348 GCCGCTTGTAAAGCTCTTTCGTCGAGTGCGCGATCATGACAAGACTCGAGGAAGAAGCCC 39241407 Query 404 CGGCTAACTACGTGCCAGCAGCCGCGGTAATA------CGTAGGGGGCTAGCGTTATCCG 457 | ||||||| |||||||||||| ||||||| | | ||||||| || ||| | | Sbjct 39241408 CAGCTAACTCCGTGCCAGCAGCTGCGGTAAGATGGGGGAGGAGGGGGCAAGTGTTCTTCA 39241467 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGT 490 |||| ||| || ||||||||| |||||| ||| Sbjct 39241468 GAATGACT-GGACGTAAAGGGCACGTAGGCGGT 39241499 Score = 188 bits (208), Expect = 2e-45 Identities = 153/184 (83%), Gaps = 1/184 (1%) Strand=Plus/Plus Query 162 CGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCT 221 |||||||||||||||| ||| ||| || ||||||||||| || |||||||||| | | Sbjct 32060344 CGTCTGATTAGCTAGT-GGTGAGGCAATAGCTTACCAAGGTGATGATCAGTAGCTGGTCC 32060402 Query 222 GAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCA 281 |||||| ||||| |||||| ||| ||| |||||||| ||| | ||||||||||||||||| Sbjct 32060403 GAGAGGATGATCAGCCACACTGGGACTAAGACACGGCCCAGATTCCTACGGGAGGCAGCA 32060462 Query 282 GTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAG 341 ||||||||| || |||||||| ||||||||||| ||||| |||||||| | |||| Sbjct 32060463 GTGGGGAATTTTCTACAATGGGTGAAAGCCTGATGGAGCAATGCCGCGTGGAGGTGGAAG 32060522 Query 342 GCCT 345 |||| Sbjct 32060523 GCCT 32060526 >seq6 Length=36014550 Score = 167 bits (184), Expect = 7e-39 Identities = 162/206 (79%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 297 CAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAA 356 |||||||| ||||||||| | ||||| |||||||| | |||||||| |||||||| | Sbjct 34939685 CAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTGGAAGGCCTACGGGTCGTCA 34939626 Query 357 AGCTCTGTCCTCAAGGAAGATA--ATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTAC 414 | ||| | ||| ||||| | ||||||||| |||||| |||| ||||||||| Sbjct 34939625 ACTTCTTTTCTCGGAGAAGAAACAATGACGGTATCTGAGGAATAAGCATCGGCTAACTCT 34939566 Query 415 GTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAA 474 ||||||||||||||||||| || ||| || ||||||||||||||| | | |||||||| Sbjct 34939565 GTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTATCCGGAATGA-TTGGGCGTAA 34939507 Query 475 AGGGTGCGTAGGTGGTTTCTTAAGTC 500 || || |||||||| || | ||||| Sbjct 34939506 AGCGTCTGTAGGTGGCTTTTCAAGTC 34939481 >seq12 Length=360304 Score = 161 bits (178), Expect = 3e-37 Identities = 160/206 (78%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 ||||| |||||||| |||||| |||| |||||| | | ||| |||| | || || Sbjct 301490 ATTAGGTAGTTGGTCAGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTTCGG 301431 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287 ||||| |||||| ||| |||||||||||| || ||||| ||||| ||||||||||||| Sbjct 301430 ATGATCAGCCACACTGGGACTGAGACACGGCCCGGACTCCCACGGGGGGCAGCAGTGGGG 301371 Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC--T 345 ||| ||| ||||||||| |||||| ||| |||||| |||||||| || ||||| | | Sbjct 301370 AATCTTGGACAATGGGCGAAAGCCCGATCCAGCAATATCGCGTGAGTGAAGAAGGGCAAT 301311 Query 346 TCGGGTCGTAAAGCTCTGTCCTCAAG 371 | | | |||||||||| || || || Sbjct 301310 GCCGCTTGTAAAGCTCTTTCGTCGAG 301285 >seq5 Length=47252588 Score = 129 bits (142), Expect = 2e-27 Identities = 146/193 (76%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 157 ACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCC 216 || || | ||||||||| ||||||| ||| || |||||||| | || ||| |||||| Sbjct 39408932 ACTCGTGCCTGATTAGCAAGTTGGTGAGGCAATAGCTTACCATGATGATGATAAGTAGCT 39408873 Query 217 GACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGG 276 | |||||| |||| | |||| ||| | ||||||| || || | || || |||||| Sbjct 39408872 GGTACGAGAGGATGATTAGGCACAGTGGGAATGAGACATGGCCCGGATTCTTATGGGAGG 39408813 Query 277 CAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGA 336 |||||||||||||| || | || ||| | |||| |||| | ||||| |||| ||| | || Sbjct 39408812 CAGCAGTGGGGAATTTTCCGCATTGGACGAAAGTCTGACGGAGCAATGCCGTGTG-GAGA 39408754 Query 337 T-GAAGGCCTTCG 348 | |||||||| || Sbjct 39408753 TGGAAGGCCTACG 39408741 >seq7 Length=35964315 Score = 77.0 bits (84), Expect = 1e-11 Identities = 56/65 (86%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 222 GAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCA 281 |||||| ||||| |||||| ||||| ||||||||| || ||||| |||||||||||||| Sbjct 31552358 GAGAGGATGATCAGCCACAATGGAAATGAGACACGACCCCAACTCTTACGGGAGGCAGCA 31552299 Query 282 GTGGG 286 |||| Sbjct 31552298 ATGGG 31552294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497594953088