Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq12 185 3e-44 seq337 181 4e-43 seq14 172 2e-40 seq8 105 2e-20 seq5 105 2e-20 seq1 100 1e-18 seq3 78.8 3e-12 seq9 77.0 1e-11 >seq12 Length=360304 Score = 185 bits (204), Expect = 3e-44 Identities = 322/462 (70%), Gaps = 26/462 (6%) Strand=Plus/Minus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAG-GTGCGGTAACACGCCCTGGA 93 ||||||||||| | |||||| ||||| |||| ||||| | || ||||| ||| |||| Sbjct 132463 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 132404 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 || |||||||||| |||| | ||||| |||||||| ||||| |||||||||||||| Sbjct 132403 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 132344 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATC 213 || ||| | ||| |||||||||| || ||||| |||||| |||| || | | || Sbjct 132343 AACCAAGATCGGATATAGCTGGTTTTCCGCGAAATCTATTTCAGTAGAGCGT--ATGATG 132286 Query 214 ACCAT---CGGGGGTAGAGCACTGTTATGGCTAGGGGG----TCATTGCGACTTACCAAA 266 | || | | ||||||||||| |||||||| | |||| || ||||||| Sbjct 132285 TCGATGGCCCGAGGTAGAGCACTCAATGGGCTAGGGTGGCCCCCATTTCGCTTTACCAAC 132226 Query 267 CCATTGCAAACTCCGAATGC------GCATCAGTTTTACCGCGGGAGTGAGGGCATGGGT 320 || | ||||||||||| | |||| | ||| | || ||| ||||| Sbjct 132225 CCCAGGGAAACTCCGAATACAGGCCGTCATCCTTAGTACAGACAGACTGA----TTGGGT 132170 Query 321 GCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGAC 380 |||||| ||| ||||||| || | || || | ||||||| ||| || | Sbjct 132169 GCTAAGATCCAAAGTCGAGAGGGAAACAGCCCAGATCGTACGCTAAGGTCCCTAAGCAAT 132110 Query 381 AGCTAAGTTAAACTAACGAAGTCTGAT--TGCTAAGACAGCTAGGATGTTGGCTTGGAAG 438 || ||| || || |||| |||| || | |||| | |||| || |||||||||| Sbjct 132109 CACTTAGTGGAA--AAGGAAG--TGATCGAGCGATGACAACCAGGAGGTGGGCTTGGAAG 132054 Query 439 CAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480 ||||||| | ||| |||| |||||| |||||||| ||| || Sbjct 132053 CAGCCATCCTTTTGAAGAAAGCGTAATAGCTCACTGGTCTAG 132012 Score = 158 bits (174), Expect = 4e-36 Identities = 295/427 (69%), Gaps = 26/427 (6%) Strand=Plus/Minus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAG-GTGCGGTAACACGCCCTGGA 93 ||||||||||| | |||||| ||||| |||| ||||| | || ||||| ||| |||| Sbjct 427 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 368 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 || |||||||||| |||| | ||||| |||||||| ||||| |||||||||||||| Sbjct 367 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 308 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATC 213 || ||| | ||| |||||||||| || ||||| |||||| |||| || | | || Sbjct 307 AACCAAGATCGGATATAGCTGGTTTTCCGCGAAATCTATTTCAGTAGAGCGT--ATGATG 250 Query 214 ACCAT---CGGGGGTAGAGCACTGTTATGGCTAGGGGG----TCATTGCGACTTACCAAA 266 | || | | ||||||||||| |||||||| | |||| || ||||||| Sbjct 249 TCGATGGCCCGAGGTAGAGCACTCAATGGGCTAGGGTGGCCCCCATTTCGCTTTACCAAC 190 Query 267 CCATTGCAAACTCCGAATGC------GCATCAGTTTTACCGCGGGAGTGAGGGCATGGGT 320 || | ||||||||||| | |||| | ||| | || ||| ||||| Sbjct 189 CCCAGGGAAACTCCGAATACAGGCCGTCATCCTTAGTACAGACAGACTGA----TTGGGT 134 Query 321 GCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGAC 380 |||||| ||| ||||||| || | || || | ||||||| ||| || | Sbjct 133 GCTAAGATCCAAAGTCGAGAGGGAAACAGCCCAGATCGTACGCTAAGGTCCCTAAGCAAT 74 Query 381 AGCTAAGTTAAACTAACGAAGTCTGAT--TGCTAAGACAGCTAGGATGTTGGCTTGGAAG 438 || ||| || || |||| |||| || | |||| | |||| || |||||||||| Sbjct 73 CACTTAGTGGAA--AAGGAAG--TGATCGAGCGATGACAACCAGGAGGTGGGCTTGGAAG 18 Query 439 CAGCCAT 445 ||||||| Sbjct 17 CAGCCAT 11 >seq337 Length=135516 Score = 181 bits (200), Expect = 4e-43 Identities = 395/582 (68%), Gaps = 36/582 (6%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| | ||||||| ||| ||| | | |||||||| | |||||||| ||||| Sbjct 96324 CGAGTCTTCATAGGGCGATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATG 96383 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 ||||||||||| | | | | || |||||||||||| ||| |||||||| ||| Sbjct 96384 ACCAGGATGAAGCTTGGATGAAACTAAGCAGAGGTCCGAACCGACTGATGTTGAAGAATC 96443 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 || ||||||| ||||| ||||||||||| || | | ||| || |||||||||||| Sbjct 96444 AGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCC 96503 Query 182 CCGAAAACTATTTAGGTAGTGCCTCAAGTATCAC----CATCG-GGGGTAGAGCACTGTT 236 |||||| || ||| || ||| | || |||| |||||| ||||||||| Sbjct 96504 CCGAAATGCGTTGAGGCGCAGC----AGT-TGACTGGACATCTAGGGGTAAAGCACTGTT 96558 Query 237 ATGGCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGC---AT--- 290 || | ||| | | | ||||||| | |||||||| |||| | || Sbjct 96559 TCGG-TGCGGGCTGCGCGAGCGGTACCAAATCGAGGCAAACTCTGAATACTAGATATGAC 96617 Query 291 -CAGTTTTACCGCGGG------------AGTGAGGGCATGGGTGCTAAGGTCCGTGCCCG 337 || || | ||| |||||| ||||| | |||| | | | || Sbjct 96618 CCAAAAATAACAGGGGTCAAGGTCGGCCAGTGAGACGATGGGGGATAAGCTTCATCGTCG 96677 Query 338 AGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAAC 397 ||||| || | ||||| | ||||||||||||| ||||||| ||| ||| | | || Sbjct 96678 AGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATA--AAG 96735 Query 398 GAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAG 457 || || | ||| |||||||| |||| ||| || | |||||||||| | ||||||||| Sbjct 96736 GAGGTGGGGGTGCAAAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCA-CCCTTTAAAGAG 96794 Query 458 TGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTC 517 ||||||| |||||||| ||||| | ||| || || | |||| |||| || Sbjct 96795 TGCGTAATAGCTCACTGATCGAGCGCCCTTGCGCTGAAGATGAACGGG-GCTAAGCGATC 96853 Query 518 TACCGAAGCAGTGGGATCATTTATATG-ATCGGTAGGGGAGC 558 | ||||||| ||||||| | | ||| |||||||||||||| Sbjct 96854 TGCCGAAGCTGTGGGAT-GTCAAAATGCATCGGTAGGGGAGC 96894 Score = 181 bits (200), Expect = 4e-43 Identities = 395/582 (68%), Gaps = 36/582 (6%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| | ||||||| ||| ||| | | |||||||| | |||||||| ||||| Sbjct 119096 CGAGTCTTCATAGGGCGATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATG 119037 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 ||||||||||| | | | | || |||||||||||| ||| |||||||| ||| Sbjct 119036 ACCAGGATGAAGCTTGGATGAAACTAAGCAGAGGTCCGAACCGACTGATGTTGAAGAATC 118977 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 || ||||||| ||||| ||||||||||| || | | ||| || |||||||||||| Sbjct 118976 AGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCC 118917 Query 182 CCGAAAACTATTTAGGTAGTGCCTCAAGTATCAC----CATCG-GGGGTAGAGCACTGTT 236 |||||| || ||| || ||| | || |||| |||||| ||||||||| Sbjct 118916 CCGAAATGCGTTGAGGCGCAGC----AGT-TGACTGGACATCTAGGGGTAAAGCACTGTT 118862 Query 237 ATGGCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGC---AT--- 290 || | ||| | | | ||||||| | |||||||| |||| | || Sbjct 118861 TCGG-TGCGGGCTGCGCGAGCGGTACCAAATCGAGGCAAACTCTGAATACTAGATATGAC 118803 Query 291 -CAGTTTTACCGCGGG------------AGTGAGGGCATGGGTGCTAAGGTCCGTGCCCG 337 || || | ||| |||||| ||||| | |||| | | | || Sbjct 118802 CCAAAAATAACAGGGGTCAAGGTCGGCCAGTGAGACGATGGGGGATAAGCTTCATCGTCG 118743 Query 338 AGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAAC 397 ||||| || | ||||| | ||||||||||||| ||||||| ||| ||| | | || Sbjct 118742 AGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATA--AAG 118685 Query 398 GAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAG 457 || || | ||| |||||||| |||| ||| || | |||||||||| | ||||||||| Sbjct 118684 GAGGTGGGGGTGCAAAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCA-CCCTTTAAAGAG 118626 Query 458 TGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTC 517 ||||||| |||||||| ||||| | ||| || || | |||| |||| || Sbjct 118625 TGCGTAATAGCTCACTGATCGAGCGCCCTTGCGCTGAAGATGAACGGG-GCTAAGCGATC 118567 Query 518 TACCGAAGCAGTGGGATCATTTATATG-ATCGGTAGGGGAGC 558 | ||||||| ||||||| | | ||| |||||||||||||| Sbjct 118566 TGCCGAAGCTGTGGGAT-GTCAAAATGCATCGGTAGGGGAGC 118526 >seq14 Length=147140 Score = 172 bits (190), Expect = 2e-40 Identities = 397/584 (68%), Gaps = 48/584 (8%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| | ||||||| ||| ||| | | |||||||| | |||||||| ||||| Sbjct 63992 CGAGTCTTCATAGGGCGAT-GTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATG 63934 Query 62 GCCAGGATGAAGGTGCGGT-AAC-ACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAA 119 ||||||||||| | | | ||| | || |||||||||||| ||| |||||||| || Sbjct 63933 ACCAGGATGAAGCTTGGATGAACTAAGCA---GAGGTCCGAACCGACTGATGTTGAAGAA 63877 Query 120 TTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 179 | || ||||||| ||||| ||||||||||| || | | ||| || ||||||||||| Sbjct 63876 TCAGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCT 63817 Query 180 CTCCGAAAACTATTTAGGTAGTGCCTCAAGTATCAC----CATCG-GGGGTAGAGCACTG 234 | |||||| || ||| || ||| | || |||| |||||| ||||||| Sbjct 63816 CCCCGAAATGCGTTGAGGCGCAGC----AGT-TGACTGGACATCTAGGGGTAAAGCACTG 63762 Query 235 TTATGGCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGC---AT- 290 || || ||| |||| ||||||| | |||||||| |||| | || Sbjct 63761 TTTCGGTGCGGGC-----TGCGCGGTACCAAATCGAGGCAAACTCTGAATACTAGATATG 63707 Query 291 ---CAGTTTTACCGCGGG------------AGTGAGGGCATGGGTGCTAAGGTCCGTGCC 335 || || | ||| |||||| ||||| | || | | | | Sbjct 63706 ACCCAAAAATAACAGGGGTCAAGGTCGGCCAGTGAGACGATGGGGGATA-GCTTCATCGT 63648 Query 336 CGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTA 395 ||||||| || | ||||| | ||||||||||||| ||||||| ||| ||| | | | Sbjct 63647 CGAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATA--A 63590 Query 396 ACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAG 455 | || || | ||| |||||||| |||| ||| || | |||||||||| | ||||||| Sbjct 63589 AGGAGGTGGGGGTGCAAAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCA-CCCTTTAAAG 63531 Query 456 AGTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTG 515 ||||||||| |||||||| ||||| | ||| || || | |||| |||| Sbjct 63530 AGTGCGTAATAGCTCACTGATCGAGCGCCCTTGCGCTGAAGATGAACGGG-GCTAAGCGA 63472 Query 516 TCTACCGAAGCAGTGGGATCATTTATATG-ATCGGTAGGGGAGC 558 ||| ||||||| ||||||| | | ||| |||||||||||||| Sbjct 63471 TCTGCCGAAGCTGTGGGAT--GTCAAATGCATCGGTAGGGGAGC 63430 >seq8 Length=40689132 Score = 105 bits (116), Expect = 2e-20 Identities = 135/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| | |||| || ||| ||| | | ||||| || | | |||||||| || || Sbjct 13627983 CGAGTCTTCATAGGGTGATTGTCACTGCTTATGGACCCAAACCTAGGTGATCTATCCCTG 13627924 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 | ||||||||| | | | | || |||||||||| ||| |||||||| ||| Sbjct 13627923 ACTAGGATGAAGCTTGGATGAAACTAAGCAGAGGTCCGAATTGACTGATGTTGAAGAATC 13627864 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 || ||||||| ||||| ||||||||||| |||| | ||| || |||||||||||| Sbjct 13627863 AGCGGATGAGTTGTGGTTAGGGGTGAAATGCTACTCGAACCCAGAGCTAGCTGGTTCTCC 13627804 Query 182 CCGAAA 187 |||||| Sbjct 13627803 CCGAAA 13627798 >seq5 Length=47252588 Score = 105 bits (116), Expect = 2e-20 Identities = 129/174 (74%), Gaps = 3/174 (2%) Strand=Plus/Plus Query 306 AGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTA 365 |||||| ||||| | |||| | | | ||||||| || | ||||| | |||||| Sbjct 42487425 AGTGAGACGATGGGGGATAAGCTTCATCGTCGAGAGGGAAACATCCCGGATCACCAGCTA 42487484 Query 366 AGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGAT 425 ||||||| ||||||| ||| || | | || || || | ||| |||||||| |||| Sbjct 42487485 AGGCCCCTAAATGACCGCTCGGTGATA--AAGGAGGTGGGGGTGCAAAGACAGCCAGGAG 42487542 Query 426 GTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGA 479 ||| || | |||||||||| || |||||| ||||||||| |||||||| |||| Sbjct 42487543 GTTTGCCTAGAAGCAGCCA-TCCTTTAAACAGTGCGTAATAGCTCACTGATCGA 42487595 >seq1 Length=42145699 Score = 100 bits (110), Expect = 1e-18 Identities = 118/156 (76%), Gaps = 4/156 (3%) Strand=Plus/Minus Query 51 ATCTACCCATGGCCAGGATGAAG-GTGCGGTAACACGCCCTGGAGGTCCGAACCCAC--T 107 ||||| ||||| ||| ||||| | || ||||| ||| |||||| | |||||||| | Sbjct 13914639 ATCTAGCCATGAGTAGGTTGAAGAGAGCTCTAACATGCCTTGGAGGACTGAACCCACGAT 13914580 Query 108 AATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAA 167 | ||| | ||||| |||| |||| ||||| |||||||||||||| || ||| | || Sbjct 13914579 ATTGTGGCAAAATAAGGG-ATGACTTGTGGCTAGGGGTGAAAGGCAAACCAAGATGAGAT 13914521 Query 168 ATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGC 203 |||||||||| || |||| |||||| |||| || Sbjct 13914520 ATAGCTGGTTTTCAGTGAAATTTATTTATGTAGAGC 13914485 >seq3 Length=50651951 Score = 78.8 bits (86), Expect = 3e-12 Identities = 90/121 (74%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 80 TAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGT 139 ||||| ||| |||| | |||||||| |||| | ||||| |||||||| ||||| | Sbjct 38799035 TAACAGGCCTTGGATGAATGAACCCACATATGTGGCAAAATACGGGGATGACTTGTGGCT 38798976 Query 140 AGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTA 199 ||||||||||||| || ||| | | |||||||||| || | || |||||| ||| Sbjct 38798975 AGGGGTGAAAGGCCAACCAAGATCATATATAGCTGGTTTTCCGCATAATCTATTTCAGTA 38798916 Query 200 G 200 | Sbjct 38798915 G 38798915 >seq9 Length=58970307 Score = 77.0 bits (84), Expect = 1e-11 Identities = 60/72 (83%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 80 TAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGT 139 ||||| ||| |||||| |||||||||| |||| | ||||| |||||||| ||||| | Sbjct 51928771 TAACAGGCCTTGGAGGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCT 51928712 Query 140 AGGGGTGAAAGG 151 |||||||||||| Sbjct 51928711 AGGGGTGAAAGG 51928700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689594306048