Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30]
337 sequences; 405,868,399 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq7 104 4e-20
>seq7
Length=35964315
Score = 104 bits (114), Expect = 4e-20
Identities = 97/121 (80%), Gaps = 2/121 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || |||| | ||||||| | ||| || ||| || ||||
Sbjct 1708 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 1765
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||| | || |||||||| ||||||||||||||||||||||||| || |
Sbjct 1766 GGCGCGAAGCTACCGTGTGTCGGATTATGACTGAACGCCTCTAAGTCAGAATCCAAGCTA 1825
Query 121 G 121
|
Sbjct 1826 G 1826
Score = 104 bits (114), Expect = 4e-20
Identities = 97/121 (80%), Gaps = 2/121 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || |||| | ||||||| | ||| || ||| || ||||
Sbjct 33820 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 33877
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||| | || |||||||| ||||||||||||||||||||||||| || |
Sbjct 33878 GGCGCGAAGCTACCGTGTGTCGGATTATGACTGAACGCCTCTAAGTCAGAATCCAAGCTA 33937
Query 121 G 121
|
Sbjct 33938 G 33938
Score = 104 bits (114), Expect = 4e-20
Identities = 97/121 (80%), Gaps = 2/121 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || |||| | ||||||| | ||| || ||| || ||||
Sbjct 41599 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 41656
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||| | || |||||||| ||||||||||||||||||||||||| || |
Sbjct 41657 GGCGCGAAGCTACCGTGTGTCGGATTATGACTGAACGCCTCTAAGTCAGAATCCAAGCTA 41716
Query 121 G 121
|
Sbjct 41717 G 41717
Score = 104 bits (114), Expect = 4e-20
Identities = 97/121 (80%), Gaps = 2/121 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || |||| | ||||||| | ||| || ||| || ||||
Sbjct 49379 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 49436
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||| | || |||||||| ||||||||||||||||||||||||| || |
Sbjct 49437 GGCGCGAAGCTACCGTGTGTCGGATTATGACTGAACGCCTCTAAGTCAGAATCCAAGCTA 49496
Query 121 G 121
|
Sbjct 49497 G 49497
Score = 104 bits (114), Expect = 4e-20
Identities = 97/121 (80%), Gaps = 2/121 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || |||| | ||||||| | ||| || ||| || ||||
Sbjct 68327 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 68384
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||| | || |||||||| ||||||||||||||||||||||||| || |
Sbjct 68385 GGCGCGAAGCTACCGTGTGTCGGATTATGACTGAACGCCTCTAAGTCAGAATCCAAGCTA 68444
Query 121 G 121
|
Sbjct 68445 G 68445
Score = 104 bits (114), Expect = 4e-20
Identities = 97/121 (80%), Gaps = 2/121 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || |||| | ||||||| | ||| || ||| || ||||
Sbjct 83868 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 83925
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||| | || |||||||| ||||||||||||||||||||||||| || |
Sbjct 83926 GGCGCGAAGCTACCGTGTGTCGGATTATGACTGAACGCCTCTAAGTCAGAATCCAAGCTA 83985
Query 121 G 121
|
Sbjct 83986 G 83986
Score = 104 bits (114), Expect = 4e-20
Identities = 97/121 (80%), Gaps = 2/121 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || |||| | ||||||| | ||| || ||| || ||||
Sbjct 91639 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 91696
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||| | || |||||||| ||||||||||||||||||||||||| || |
Sbjct 91697 GGCGCGAAGCTACCGTGTGTCGGATTATGACTGAACGCCTCTAAGTCAGAATCCAAGCTA 91756
Query 121 G 121
|
Sbjct 91757 G 91757
Score = 104 bits (114), Expect = 4e-20
Identities = 97/121 (80%), Gaps = 2/121 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || |||| | ||||||| | ||| || ||| || ||||
Sbjct 99419 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 99476
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||| | || |||||||| ||||||||||||||||||||||||| || |
Sbjct 99477 GGCGCGAAGCTACCGTGTGTCGGATTATGACTGAACGCCTCTAAGTCAGAATCCAAGCTA 99536
Query 121 G 121
|
Sbjct 99537 G 99537
Score = 104 bits (114), Expect = 4e-20
Identities = 97/121 (80%), Gaps = 2/121 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || |||| | ||||||| | ||| || ||| || ||||
Sbjct 107430 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 107487
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||| | || |||||||| ||||||||||||||||||||||||| || |
Sbjct 107488 GGCGCGAAGCTACCGTGTGTCGGATTATGACTGAACGCCTCTAAGTCAGAATCCAAGCTA 107547
Query 121 G 121
|
Sbjct 107548 G 107548
Score = 104 bits (114), Expect = 4e-20
Identities = 97/121 (80%), Gaps = 2/121 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || |||| | ||||||| | ||| || ||| || ||||
Sbjct 115209 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 115266
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||| | || |||||||| ||||||||||||||||||||||||| || |
Sbjct 115267 GGCGCGAAGCTACCGTGTGTCGGATTATGACTGAACGCCTCTAAGTCAGAATCCAAGCTA 115326
Query 121 G 121
|
Sbjct 115327 G 115327
Score = 104 bits (114), Expect = 4e-20
Identities = 97/121 (80%), Gaps = 2/121 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || |||| | ||||||| | ||| || ||| || ||||
Sbjct 122983 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 123040
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||| | || |||||||| ||||||||||||||||||||||||| || |
Sbjct 123041 GGCGCGAAGCTACCGTGTGTCGGATTATGACTGAACGCCTCTAAGTCAGAATCCAAGCTA 123100
Query 121 G 121
|
Sbjct 123101 G 123101
Score = 104 bits (114), Expect = 4e-20
Identities = 97/121 (80%), Gaps = 2/121 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || |||| | ||||||| | ||| || ||| || ||||
Sbjct 138518 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 138575
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||| | || |||||||| ||||||||||||||||||||||||| || |
Sbjct 138576 GGCGCGAAGCTACCGTGTGTCGGATTATGACTGAACGCCTCTAAGTCAGAATCCAAGCTA 138635
Query 121 G 121
|
Sbjct 138636 G 138636
Score = 104 bits (114), Expect = 4e-20
Identities = 97/121 (80%), Gaps = 2/121 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || |||| | ||||||| | ||| || ||| || ||||
Sbjct 146269 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 146326
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||| | || |||||||| ||||||||||||||||||||||||| || |
Sbjct 146327 GGCGCGAAGCTACCGTGTGTCGGATTATGACTGAACGCCTCTAAGTCAGAATCCAAGCTA 146386
Query 121 G 121
|
Sbjct 146387 G 146387
Score = 104 bits (114), Expect = 4e-20
Identities = 97/121 (80%), Gaps = 2/121 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || |||| | ||||||| | ||| || ||| || ||||
Sbjct 154266 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 154323
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||| | || |||||||| ||||||||||||||||||||||||| || |
Sbjct 154324 GGCGCGAAGCTACCGTGTGTCGGATTATGACTGAACGCCTCTAAGTCAGAATCCAAGCTA 154383
Query 121 G 121
|
Sbjct 154384 G 154384
Score = 104 bits (114), Expect = 4e-20
Identities = 97/121 (80%), Gaps = 2/121 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || |||| | ||||||| | ||| || ||| || ||||
Sbjct 162040 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 162097
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||| | || |||||||| ||||||||||||||||||||||||| || |
Sbjct 162098 GGCGCGAAGCTACCGTGTGTCGGATTATGACTGAACGCCTCTAAGTCAGAATCCAAGCTA 162157
Query 121 G 121
|
Sbjct 162158 G 162158
Score = 104 bits (114), Expect = 4e-20
Identities = 97/121 (80%), Gaps = 2/121 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || |||| | ||||||| | ||| || ||| || ||||
Sbjct 169820 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 169877
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||| | || |||||||| ||||||||||||||||||||||||| || |
Sbjct 169878 GGCGCGAAGCTACCGTGTGTCGGATTATGACTGAACGCCTCTAAGTCAGAATCCAAGCTA 169937
Query 121 G 121
|
Sbjct 169938 G 169938
Score = 100 bits (110), Expect = 5e-19
Identities = 97/121 (80%), Gaps = 3/121 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || |||| | ||||||| | ||| || ||| || ||||
Sbjct 60564 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGG-TGAAAAGCCAGT 60620
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||| | || |||||||| ||||||||||||||||||||||||| || |
Sbjct 60621 GGCGCGAAGCTACCGTGTGTCGGATTATGACTGAACGCCTCTAAGTCAGAATCCAAGCTA 60680
Query 121 G 121
|
Sbjct 60681 G 60681
Score = 95.1 bits (104), Expect = 2e-17
Identities = 96/121 (79%), Gaps = 3/121 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || |||| | ||||||| | ||| || ||| || ||||
Sbjct 76105 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 76162
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||| | || |||||||| |||||||||||| |||||||||||| || |
Sbjct 76163 GGCGCGAAGCTACCGTGTGTCGGATTATGACTGAACGCCTCT-AGTCAGAATCCAAGCTA 76221
Query 121 G 121
|
Sbjct 76222 G 76222
Score = 91.5 bits (100), Expect = 2e-16
Identities = 95/121 (79%), Gaps = 3/121 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||| | || |||| | ||||||| | ||| || ||| || ||||
Sbjct 130755 GTACGAGAGGAACAGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 130812
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| ||||| |||||| | || |||||||| ||||||||||||||||||||||||| || |
Sbjct 130813 GGCGCGA-GCTACCGTGTGTCGGATTATGACTGAACGCCTCTAAGTCAGAATCCAAGCTA 130871
Query 121 G 121
|
Sbjct 130872 G 130872
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 819197325568
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