Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Setaria_20italica_20[refseq_20GCF_5F000263155.2_202015-10-30] 337 sequences; 405,868,399 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq4 156 3e-33 seq7 116 3e-21 >seq4 Length=40407879 Score = 156 bits (172), Expect = 3e-33 Identities = 542/839 (65%), Gaps = 15/839 (2%) Strand=Plus/Minus Query 61099 TACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATG 61158 ||||| ||||||| || ||||||||||||| |||||||| || | ||| ||| | Sbjct 10866629 TACAAGAAGGCGGTGGCGTCCTTCTGGACGGCCGAGGAGGTGGACCTCTCCGCCGACGCG 10866570 Query 61159 AATGACTGGGA----GCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGC 61214 ||||||| ||| | || || || | || ||||| || ||| | || Sbjct 10866569 CGCCACTGGGACGAGGCGCTC-TCCCCCGACGAGCGCCACTTCATCTCCCACGTGCTCGC 10866511 Query 61215 GTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGA 61274 ||||| ||||| || ||||| ||||| ||||| | | || ||| | || Sbjct 10866510 CTTCTTCGCCGCCTCCGACGGCATCGTGCTCGAGAACCTCGCGTCCCGCTTCATGTCCGA 10866451 Query 61275 GGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCA 61334 ||||| || | ||||| || ||||||||||||||||| ||||| ||||| |||| Sbjct 10866450 CGTGCAGGTCGCCGAGGCCCGCGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCA 10866391 Query 61335 CTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACG 61394 ||||||||||||| | || |||| || |||||| | || | || || || || Sbjct 10866390 CTCGGAGATGTACTCGCTGCTGCTCGAGACCTACATCCGCGACGGCGCCGAGAAGGACCG 10866331 Query 61395 ATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAA 61454 | ||| |||||||| || | || || || || || || || |||||| | Sbjct 10866330 CCTCTTCCGCGCCATCGACACCGTCCCCGCCGTACGCCGCAAGGCCGACTGGGCCATGCG 10866271 Query 61455 TTGGATCACCAGTACAACGGCTA--CATTTGGTGAACGATTGCTGGCATTTGCGGTGGTC 61512 ||||| || ||| | || | || ||| | | || || || ||| Sbjct 10866270 CTGGAT-----TGACGGCGGGGAGCGCTTCGCCGAGCGACTCGTCGCGTTCGCCTGCGTC 10866216 Query 61513 GAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTT 61572 ||||| | || ||| || || || ||| ||||| ||| | ||||| || || || Sbjct 10866215 GAGGGAATCTTCTTCTCGGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGGGGGCTC 10866156 Query 61573 ATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGAT 61632 ||||| || || |||||| ||| ||| | || || |||||||||||| |||| || || Sbjct 10866155 ATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCACTGCGAC 10866096 Query 61633 TTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGT 61692 || || | || | | | | | || | | | | || | ||| || || | Sbjct 10866095 TTCGCGTGCCTCCTCTACGACCTC-CTCCGCAGCA-AGCTCGAC-GAGCCCCGCGTCCGC 10866039 Query 61693 GAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTC 61752 ||||| || || || || ||||| | || ||| | ||||| | |||||| Sbjct 10866038 GAGATCGTCGCCGACGCCGTCGACATCGAGCGAGAGTTTGTCTGCGACGCGCTCCCCGTC 10865979 Query 61753 TCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGT 61812 | ||| |||||||||| | | |||||| ||||| || || || || || ||||| Sbjct 10865978 GCGCTCGTCGGCATGAACGGCGCGCTAATGAGCCAGTACATCGAGTTCGTCGCAGACCGC 10865919 Query 61813 CTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATG 61872 ||| | | | | | || ||| ||| || || | ||||| ||||| | ||| Sbjct 10865918 CTGCTCATGGCTCTCGGGTGCAAGAAGATGTACAACGCCGCCAACCCCTTTGACTGGATG 10865859 Query 61873 GACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 || | || |||||| | |||||||| || || |||||||| || || |||||||| || Sbjct 10865858 GAGCTCATCTCGCTGCAGGGCAAGACAAACTTCTTCGAGAAGCGCGTCGGCGACTACCA 10865800 >seq7 Length=35964315 Score = 116 bits (128), Expect = 3e-21 Identities = 469/732 (64%), Gaps = 14/732 (2%) Strand=Plus/Minus Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGT 61263 || ||| | || ||||| ||||| || ||||| ||||| ||||| | | || Sbjct 23912179 CACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTGCTCGAGAACCTCTCCTCCCGC 23912120 Query 61264 TTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATG 61323 ||| | || || || || | |||||||| ||||||||||||||||| ||||| Sbjct 23912119 TTCATGTCCGACGTCCAGGTCGCCGAGGCGCGCGCCTTCTACGGCTTCCAGATCGCCATC 23912060 Query 61324 GAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCG 61383 ||||| ||||||||||||||||| | || |||| || |||||| | || | || Sbjct 23912059 GAGAACATCCACTCGGAGATGTACTCGCTGCTTCTCGAGACCTACATCCGCGACGGCGCC 23912000 Query 61384 GAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGAT 61443 || || | | ||| |||||||| || | || || ||| || || || || Sbjct 23911999 GAGAAGGACCACCTCTTCCGCGCCATCGACACCGTCCCCGCCGTGCGCCGCAAGGCCGAC 23911940 Query 61444 TGGGCCTTCAATTGGATCACCAGTACAACGGCTA--CATTTGGTGAACGATTGCTGGCAT 61501 |||||| | |||||| || ||| | || | || || | | || | Sbjct 23911939 TGGGCCATGCGCTGGATC-----GACGGCGGGGAGCGCTTCGCCGAGCGCCTCGTCGCCT 23911885 Query 61502 TTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGA 61561 | || || ||||| | || ||| || || || ||| ||||| ||| | |||| Sbjct 23911884 TCGCCTGCGTTGAGGGCATCTTCTTCTCGGGCTCCTTCTGCGCCATCTTCTGGCTCAAGA 23911825 Query 61562 AACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCA 61621 | || || || ||||| || || |||||| ||| ||| | || || |||||||||||| Sbjct 23911824 AGCGCGGCCTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCC 23911765 Query 61622 TGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGG 61681 | || || || || || | || | | | | | || | | | | || | |||| Sbjct 23911764 TCCACTGCGACTTCGCCTGCCTCCTCTACGACCTC-CTCCGCAGCA-AGCTCGAC-GAGG 23911708 Query 61682 AGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATT--TCTGACTGA 61739 || || | ||||| || || || || ||||| | || || |||| || Sbjct 23911707 GCCGCGTCCGCGAGATCGTCGCCGACGCCGTCGACATCGAGCGCGAGTTCGTCTG--CGA 23911650 Query 61740 CGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATT 61799 ||| | |||||| | ||| |||| ||||| | || || ||| ||||| || || || Sbjct 23911649 CGCGCTCCCCGTCGCGCTCGTCGGAATGAACGGCGGGCTCATGAGCCAGTACATCGAGTT 23911590 Query 61800 TGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCC 61859 || |||||||| ||| | | | |||| || ||| || || ||||| Sbjct 23911589 CGTCGCCGACCGCCTGCTCATGGCGCTGGGGCACCAGAAGATGTACAACGTCGCCAACCC 23911530 Query 61860 ATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGT 61919 ||| || | ||||| | || |||||| | |||||||| || || |||||||| || || Sbjct 23911529 ATTCGACTGGATGGAGCTCATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGT 23911470 Query 61920 AGGCGACTATCA 61931 || || || || Sbjct 23911469 CGGGGAGTACCA 23911458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397566367113680