Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq2 170 8e-40 >seq2 Length=11374105 Score = 170 bits (188), Expect = 8e-40 Identities = 209/279 (75%), Gaps = 10/279 (4%) Strand=Plus/Minus Query 409 CCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-AAACC 467 |||||||| |||||||||| |||||||| || | ||||||| ||||| ||||| Sbjct 11345894 CCGTCTTGAAACACGGACCGAGGAGTCTGACGTGCGTGCGAGTCGACGGGTGCAGAAACC 11345835 Query 468 CGTGCGC-GTAATGAAAGTGAACGGAGGTGGGAACCCGTGA--GGGTGCACCATCGACCG 524 | || | | || |||| ||| | || | ||| | | |||||||| | | || Sbjct 11345834 CATGAGGTGCAAGGAAACTGATTTGCGG--GATCCCCCTCAAGGGGTGCACTGTTGGCCA 11345777 Query 525 ATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGT 584 | || || | || | || || |||| |||||| | ||||||||||||||||| Sbjct 11345776 ACCCCAATCTTTT---AAGGGTTCGAGTG-GAGCATGAACATCGGGACCCGAAAGATGGT 11345721 Query 585 GAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCT 644 ||||||||||||| ||| ||||||||||||||||||||||||||| ||||||| | || Sbjct 11345720 GAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGCAGCGATACT 11345661 Query 645 GGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | ||||||||||| ||||| | |||||||||||||||| Sbjct 11345660 GACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 11345622 Score = 150 bits (166), Expect = 7e-34 Identities = 137/173 (79%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 25 TGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTT 84 ||| || || ||| |||||| ||||||||||||||||| | || ||| |||||||| Sbjct 11346304 TGAGGCGCCATCGGCGAGTCAGGTTGTTTGGGAATGCAGACCCAATCGGGCGGTAAATTC 11346245 Query 85 CTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATG 144 | || || |||||||| ||| |||||||||||||| ||||||| | || |||||||| Sbjct 11346244 CGTCCAAGGCTAAATACGGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATG 11346185 Query 145 AAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAG 197 ||||| |||||| ||||||||| ||| || | ||||||||| ||||||| Sbjct 11346184 AAAAGGACTTTGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCAGGAGGGAAG 11346132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079999571000