Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq2 147 3e-33 seq4 82.4 1e-13 seq6 73.4 5e-11 >seq2 Length=11374105 Score = 147 bits (162), Expect = 3e-33 Identities = 181/244 (74%), Gaps = 13/244 (5%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||||||||||| |||| | ||||||||| ||||| ||| ||| | || Sbjct 1806397 CCTTCCAGCACCGGGCAGGTGTCARACTCTATACATCGTGTTACCA-CTTAGCAGAGTCC 1806339 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 |||||||||| |||||||||||| ||| || | | ||| | | | |||| | Sbjct 1806338 TGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAA--TCAAAAGA 1806281 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || | ||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 1806280 T--------AGGAGAG-CACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCT 1806230 Query 186 TAACCACAGTTCACCCGAA-CGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTAC 244 | || |||| | |||| |||| |||||| || ||| || ||||||||||||||| Sbjct 1806229 TCGACATGGTTCTCTCGAAGCGCCCTAGTATACTATACTTGTTCACCTGTGTCGGTTTGG 1806170 Query 245 GGTA 248 |||| Sbjct 1806169 GGTA 1806166 >seq4 Length=8682450 Score = 82.4 bits (90), Expect = 1e-13 Identities = 71/87 (82%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||| ||||||||||||| || |||||| | |||| || ||| || Sbjct 7648708 CTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTA-CGACTTTGCGG 7648650 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGC 87 ||||||||||||| |||||||||||| Sbjct 7648649 AGACCTGTGTTTTTGGTAAACAGTCGC 7648623 >seq6 Length=8045491 Score = 73.4 bits (80), Expect = 5e-11 Identities = 44/47 (94%), Gaps = 0/47 (0%) Strand=Plus/Minus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTA 187 |||||||||||||||||||||||||||| |||||||||| |||||| Sbjct 2125585 GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGYTCCTTA 2125539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694399865460