Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq6 459 8e-127 seq18 233 6e-59 seq8 232 2e-58 seq20 75.2 3e-11 >seq6 Length=8045491 Score = 459 bits (508), Expect = 8e-127 Identities = 389/475 (82%), Gaps = 3/475 (1%) Strand=Plus/Plus Query 23 AAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGC 82 |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| || Sbjct 1729734 AAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGATGCAAAGC 1729793 Query 83 GAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGATAGAGGTTTCCCCTTC 142 |||||||||||||| |||||||| | || ||||| || | ||||| | || ||| Sbjct 1729794 GAAGAACCTTACCAGGGCTTGACATGCCGCGAATCCTCTTGAAAGAGAGGGGTGCC-TTC 1729852 Query 143 GGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGT 202 ||| || | ||||||| ||||||| ||||||||||||||| ||| || |||||||| Sbjct 1729853 GGGA-ACGCGGACACAGGTGGTGCATGGCTGTCGTCAGCTCGTGCCGTAAGGTGTTGGGT 1729911 Query 203 TAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGGGCACTCTA 262 ||||||||||||||||||||||||| | |||||||||| |||| ||| || || || Sbjct 1729912 TAAGTCCCGCAACGAGCGCAACCCTCGTGTTTAGTTGCCACCATTGGGTTTGGAACCCTG 1729971 Query 263 AGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCT 322 | |||||||||||| || ||||||||||||| ||| |||||||| ||||||||||||| Sbjct 1729972 AACAGACTGCCGGTGATAAGCCGGAGGAAGGTGAGGATGACGTCAAGTCATCATGCCCCT 1730031 Query 323 TATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGG 382 |||| ||||| |||||||||||||||||| | |||||||| |||| |||||||| Sbjct 1730032 TATGCCCTGGGCGACACACGTGCTACAATGGCCGGGACAAAGGGTCGCGATCCCGCGAGG 1730091 Query 383 TCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATG 442 ||| || |||| ||| || |||||||||||||| || |||||||||| || ||| Sbjct 1730092 GTGAGCTAACCCCAAAAACCCGTCCTCAGTTCGGATTGCAGGCTGCAACTCGCCTGCATG 1730151 Query 443 AAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCTACGGTGAATACGTTCCCG 496 |||| ||||||||||||||||| | |||| ||| | |||||||| |||||||| Sbjct 1730152 AAGCCGGAATCGCTAGTAATCGCCGGTCAGCCATACGGCGGTGAATTCGTTCCCG 1730206 Score = 170 bits (188), Expect = 6e-40 Identities = 138/167 (83%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 156 ACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAAC 215 |||| || | ||||| ||||||||||||||| ||| || ||||||||||||||||||||| Sbjct 6327434 ACAGCTGCTCCATGGCTGTCGTCAGCTCGTGCCGTAAGGTGTTGGGTTAAGTCCCGCAAC 6327375 Query 216 GAGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGG 275 |||||||||||| | |||||||||| |||| ||| || || || | ||||||||| Sbjct 6327374 GAGCGCAACCCTCGTGTTTAGTTGCCACCATTGGGTTTGGAACCCTGAACAGACTGCCGG 6327315 Query 276 TGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCT 322 ||| || |||||||||||||| || ||||||| |||||| | |||| Sbjct 6327314 TGATAACCCGGAGGAAGGTGGTGATGACGTCACGTCATCACGGCCCT 6327268 Score = 152 bits (168), Expect = 2e-34 Identities = 113/132 (86%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1732459 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 1732518 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| |||| |||||||||||||||| |||||||| | || |||| Sbjct 1732519 GTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGACATGCCGCGAATCCTC 1732578 Query 121 TAGAGATAGAGG 132 | || | ||||| Sbjct 1732579 TTGAAAGAGAGG 1732590 >seq18 Length=4131207 Score = 233 bits (258), Expect = 6e-59 Identities = 201/248 (81%), Gaps = 2/248 (1%) Strand=Plus/Minus Query 15 TGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGA 74 ||||||||||||||||||| |||| || ||| |||||||||||||||||||||||||||| Sbjct 3105805 TGAAACTCAAAGGAATTGATGGGGGCCTGCAAAAGCGGTGGAGCATGTGGTTTAATTCGA 3105746 Query 75 AGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGATAGAGGTT 134 ||| |||||||||||| | ||| |||| | ||| ||||| || | ||||| Sbjct 3105745 TACAAAATGAAGAACCTTACTAGGGCTTAACATGCCGTGAATCCTCTTGAAAGAGAGGGG 3105686 Query 135 TCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGA 194 | || || ||| ||| || ||||||| |||||||||||| |||||||||||| | || Sbjct 3105685 TGCCTTT--GGGAACATAGACACAGGTGGTGCATGGTTGTCATCAGCTCGTGTCATAAGG 3105628 Query 195 TGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGG 254 ||||||||||||||||||||||||||||||||| | |||||||||| |||| ||| | Sbjct 3105627 TGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTGTTTAGTTGCCACCATTGGGTTTG 3105568 Query 255 GCACTCTA 262 | || ||| Sbjct 3105567 GAACCCTA 3105560 >seq8 Length=7641483 Score = 232 bits (256), Expect = 2e-58 Identities = 283/386 (73%), Gaps = 2/386 (1%) Strand=Plus/Plus Query 78 AACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGATAGAGGTTTCC 137 || || ||||||||||| | |||||||| | || ||||| || | |||| | | Sbjct 4070109 AAAGCAAAGAACCTTACTAGGGCTTGACATGCCACGAATCCTCTTGAAAGGGAGGGGTGC 4070168 Query 138 CCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGT 197 | || || |||| ||||||| ||||||| |||| |||||||||| || | ||| Sbjct 4070169 CTTTGGGAATGCAGAC--ACAGGTGGTGCATGGCTGTCATCAGCTCGTGCTGTAGGGTGT 4070226 Query 198 TGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGGGCA 257 ||||||||||||| ||| || ||||||||| | |||||||||| |||| ||| || | Sbjct 4070227 TGGGTTAAGTCCCACAAAGACCGCAACCCTCGTGTTTAGTTGCCACCATTGGGTTTGGAA 4070286 Query 258 CTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATG 317 | || | ||||||| ||| || ||| ||||| ||| ||| |||||||| ||||||| Sbjct 4070287 CCCTGAACAGACTGCCAATGATAAGCCGAAGGAATGTGAGGATGACGTCAAGTCATCATR 4070346 Query 318 CCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCG 377 ||||||||| ||||| |||||||||||||| ||| | |||||||| || | | | Sbjct 4070347 CCCCTTATGCCCTGGGCGACACACGTGCTACAGTGGCTGAGACAAAGGGTTGCAATCCTG 4070406 Query 378 CGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACT 437 | | ||| || |||| ||| | ||||||| |||||| || |||||||| || Sbjct 4070407 CAGGAGTGAGCTAACCCCAAAAACCCATCCTCAGTTTGGATTGCAGGCTGCAACTTACCT 4070466 Query 438 ATATGAAGCTGGAATCGCTAGTAATC 463 | ||||| ||||||||||||||| Sbjct 4070467 GCAAGAAGCCAGAATCGCTAGTAATC 4070492 Score = 109 bits (120), Expect = 2e-21 Identities = 125/164 (76%), Gaps = 3/164 (2%) Strand=Plus/Plus Query 333 GCTACACACGTGCTACAATGGACAAT-ACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAA 391 || ||||| |||||| |||| ||||| |||| ||| ||| | | | ||| || ||| Sbjct 4223725 GCCACACATGTGCTATAATG-ACAATTACAATGGGAAGCAAGCCTGTAAGGAGGAGAAAA 4223783 Query 392 TCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAA 451 || | |||| | ||||||| ||||||| |||||||||||| | |||||| ||||| Sbjct 4223784 TCT-AGAAAGATTGCCTCAGTTTGGATTGTTCTCTGCAACTCGAGAACATGAAGTTGGAA 4223842 Query 452 TCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTTCCC 495 ||| ||||||||| |||||||||||| ||||||| || ||| Sbjct 4223843 TCGTTAGTAATCGCAGATCAGCATGCCGTAGTGAATATGTACCC 4223886 >seq20 Length=2390803 Score = 75.2 bits (82), Expect = 3e-11 Identities = 53/61 (87%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 27 GAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAAG 86 |||||||||||| ||||||| ||||| |||| |||||||||| ||| | |||| |||||| Sbjct 1183017 GAATTGACGGGGGCCCGCACCAGCGGCGGAGGATGTGGTTTAGTTCCACGCAAAGCGAAG 1182958 Query 87 A 87 | Sbjct 1182957 A 1182957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503999699200