Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq11 233 3e-59 seq9 131 3e-28 >seq11 Length=5849386 Score = 233 bits (258), Expect = 3e-59 Identities = 169/193 (88%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| || | || | ||||||||||||||||||||||||||||||||| Sbjct 4658272 TACTAGGTCGAATTACTATCGCGGYG-CGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 4658330 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 |||||||||||||||| ||||||||||||| ||||||||||||||| | || || Sbjct 4658331 CGACGGTCTAAACCCAGACCACGTTCCCTATTGGTGGGTGAACAATCC--CTATT-GTGA 4658387 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 4658388 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCRAAGGATCAAAAAGCAACGTCGCTAT 4658447 Query 181 GAACGCTTGGCTG 193 |||| |||||||| Sbjct 4658448 GAACACTTGGCTG 4658460 >seq9 Length=6991192 Score = 131 bits (144), Expect = 3e-28 Identities = 87/97 (90%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 183 ACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCA 242 ||||||||||||||||||| |||||||| |||| ||||||||||| ||||| |||| ||| Sbjct 4498100 ACGCTTGGCTGCCACAAGCGAGTTATCCTTGTGATAACTTTTCTGACACCTTTAGCTTCA 4498041 Query 243 AATTTCGAGGGACTAAAGGATCGATAGGCCACACTTT 279 |||| ||| || |||||||||||||||| |||||||| Sbjct 4498040 AATTCCGAAGGCCTAAAGGATCGATAGGTCACACTTT 4498004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854399829120