Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq7 145 6e-30 >seq7 Length=7914316 Score = 145 bits (160), Expect = 6e-30 Identities = 383/579 (66%), Gaps = 10/579 (2%) Strand=Plus/Minus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 ||||||| ||| ||| | | || ||| |||||||| |||||||| || ||||||| Sbjct 1959496 TGTTCCCGATCAGGTACCCGCAGATCTGGGAGATGTACAAGAAGGCGGAGGCGTCCTTCT 1959437 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGT----TTATCG 61179 |||||| ||||||||| || | ||| | ||| | ||||||||| | | || Sbjct 1959436 GGACGGCGGAGGAGGTGGACCTCTCCCACGACCTCCGGCACTGGGAGCAGGACCTCACCG 1959377 Query 61180 AGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATC 61239 || || | || ||||| | || || | || ||||| || || || ||||| ||| Sbjct 1959376 C-CGACGAGCGCCACTTCATCACCCACGTCCTCGCCTTCTTCGCGGCCTCCGACGGCATC 1959318 Query 61240 GTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGT 61299 || ||||| | | || ||| | ||||||| || || | ||||| || Sbjct 1959317 GTGCTCGAGAACCTGGCSGGCCGCTTCATGAAGGAGGTCCAGGTCGCCGAGGCCCGCGCC 1959258 Query 61300 TTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATC 61359 ||||||||||||||||| ||||| ||||| ||||||| ||||||||||| | ||| | Sbjct 1959257 TTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCCGAGATGTACAGCCTCCTCCTG 1959198 Query 61360 GATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATA 61419 || || ||||||| ||| | || | || | ||| ||| | || || | Sbjct 1959197 GAGACCTACATCAAGGACTCCGAGGCCAAGGCCCGCCTCTTCCGCGCCGTGGACACCGTC 1959138 Query 61420 CCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACA 61479 || ||| || || || || |||||| || ||||| | | | | || | | Sbjct 1959137 CCCTGCGTGGCCCGCAAGGCCGACTGGGCCCTCCGCTGGAT--CGACTCCTCCGAGT-CC 1959081 Query 61480 TTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGG-ATCGTT 61538 || | || || | | || || || |||||||| | || ||| || | | | Sbjct 1959080 TTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGCAGCTTC 1959021 Query 61539 TGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGA 61598 || ||| ||||| ||| | ||||| || || || |||||||| || |||||| ||| || Sbjct 1959020 TG-CGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGA 1958962 Query 61599 GTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC 61637 | | || || |||||||||||| | || || || || || Sbjct 1958961 GCTCATCTCCCGCGACGAGGGCCTCCACTGCGACTTCGC 1958923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567903092800