Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq2 149 7e-31 seq6 107 2e-18 seq8 98.7 1e-15 seq3 98.7 1e-15 >seq2 Length=11374105 Score = 149 bits (164), Expect = 7e-31 Identities = 135/170 (79%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 160129 CTATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGT 160188 ||| |||||||||||||||||||| || |||| | ||||||||||| ||||| ||| Sbjct 4329606 CTACATGGGTCGTGAGTGGGAACTAAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGT 4329665 Query 160189 TGCATACTCTGCTCCAGTCGCTGCTGCTTCTGCTGTATTCCTCGTCTACCCCTTCGGTCA 160248 |||||| || ||||| || || |||||| ||||||| ||| | ||||||| | ||||| Sbjct 4329666 TGCATATTCAGCTCCTGTAGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCA 4329725 Query 160249 GGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACT 160298 || ||| || |||| ||||||||| || || ||||||||||| |||| Sbjct 4329726 AGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACT 4329775 >seq6 Length=8045491 Score = 107 bits (118), Expect = 2e-18 Identities = 119/158 (75%), Gaps = 3/158 (2%) Strand=Plus/Plus Query 160218 CTGCTGTATTCCTCGTCTACCCCTTCGGTCAGGGTTCTTTCTCCGATGCTATGCCTCTTG 160277 ||||||| ||| | ||||||| | ||||| || ||| || |||| | || |||| | Sbjct 2591563 CTGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTTTCTGATGGTTTGTCTCTAG 2591622 Query 160278 GTATCTCTGGTACTTTTAACTATATGCTTGTATTCCAAGCAGAACACAATATCCTTATGC 160337 | || |||||||| || |||| || |||||||| | ||||||||| ||||||||| Sbjct 2591623 GAATTTCTGGTACATTCAACTTCATAATTGTATTCAAGACAGAACACA---TCCTTATGC 2591679 Query 160338 ATCCGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGT 160375 | || ||||||||| | || || ||||| |||||| || Sbjct 2591680 ACCCATTCCACATGTTAGGCGTAGCTGGTGTATTCTGT 2591717 >seq8 Length=7641483 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 160601 ATCTGGTTCACTGCCCTTGGTGTTTCTACCATGGCATTCAATCTCAATGGTTTCAACTTC 160660 || ||||| | ||| | ||| || ||| ||||| ||||| || || | |||| | || Sbjct 525067 ATTTGGTTTATTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGATTTCCATTTT 525126 Query 160661 AACCAGTCCATCTTGGACAACCAAGGACAAGTTCTGAACACTTGGGCAGACGTGCTTAAC 160720 ||||| ||||| | ||||| | | | ||| | || | |||| | || | | ||| Sbjct 525127 AACCAATCCATAGTTGACAATCCGAGTCGTGTTATTAATATTTGGACTGATATCATCAAC 525186 Query 160721 CGCGCTGGTCTGGGCATGGAAGTCATGCACGAGCGTAACGCTCACAACTTCCCTCTCGAC 160780 | ||| ||| || |||||||| ||||| || ||||| ||| ||||||||||||| ||| Sbjct 525187 CATGCTAATCTTGGTATGGAAGTGATGCATGAACGTAATGCTTACAACTTCCCTCTAGAC 525246 Query 160781 CTTGCTGCTGCTGA 160794 | ||||| | ||| Sbjct 525247 TTAGCTGCAGTTGA 525260 >seq3 Length=8976907 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/211 (71%), Gaps = 5/211 (2%) Strand=Plus/Plus Query 160046 GAAGCCGCATCGCTCGACGAGTGGCTCTATAACGGTGGTCCTTTCCAACTCGTAGTC--- 160102 |||||||||| | || ||||| | || || || ||||||| | | || | || Sbjct 715733 GAAGCCGCATATGTTGATTAGTGGTTATACAATGGCGGTCCTTACGAGCTAATTGTTCTA 715792 Query 160103 TTC--CACTTCCTGATCGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACC 160160 ||| |||||| | | || | | ||| |||| ||||||||||||||| || || Sbjct 715793 TTCTACACTTCTTAMTTGGTGTAGCTTGCTACATGGATCGTGAGTGGGAACTTAGTTTCC 715852 Query 160161 GTCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCTGCTTCTG 160220 |||| ||||||| ||| ||||| ||||||||| || ||||| || || |||||| ||| Sbjct 715853 GTCTGGGTATGCATCCTTGGATTGCTGTTGCATATTCAGCTCCTGTWGCAGCTGCTACTG 715912 Query 160221 CTGTATTCCTCGTCTACCCCTTCGGTCAGGG 160251 |||| || | |||||| | ||||| || Sbjct 715913 CTGTTTTATTGATCTACCTTATTGGTCAAGG 715943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551375862156000