Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17]
20 sequences; 136,670,443 total letters
Query= NC_031903.1
Length=172345
Score E
Sequences producing significant alignments: (Bits) Value
seq2 149 7e-31
seq6 107 2e-18
seq8 98.7 1e-15
seq3 98.7 1e-15
>seq2
Length=11374105
Score = 149 bits (164), Expect = 7e-31
Identities = 135/170 (79%), Gaps = 0/170 (0%)
Strand=Plus/Plus
Query 160129 CTATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGT 160188
||| |||||||||||||||||||| || |||| | ||||||||||| ||||| |||
Sbjct 4329606 CTACATGGGTCGTGAGTGGGAACTAAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGT 4329665
Query 160189 TGCATACTCTGCTCCAGTCGCTGCTGCTTCTGCTGTATTCCTCGTCTACCCCTTCGGTCA 160248
|||||| || ||||| || || |||||| ||||||| ||| | ||||||| | |||||
Sbjct 4329666 TGCATATTCAGCTCCTGTAGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCA 4329725
Query 160249 GGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACT 160298
|| ||| || |||| ||||||||| || || ||||||||||| ||||
Sbjct 4329726 AGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACT 4329775
>seq6
Length=8045491
Score = 107 bits (118), Expect = 2e-18
Identities = 119/158 (75%), Gaps = 3/158 (2%)
Strand=Plus/Plus
Query 160218 CTGCTGTATTCCTCGTCTACCCCTTCGGTCAGGGTTCTTTCTCCGATGCTATGCCTCTTG 160277
||||||| ||| | ||||||| | ||||| || ||| || |||| | || |||| |
Sbjct 2591563 CTGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTTTCTGATGGTTTGTCTCTAG 2591622
Query 160278 GTATCTCTGGTACTTTTAACTATATGCTTGTATTCCAAGCAGAACACAATATCCTTATGC 160337
| || |||||||| || |||| || |||||||| | ||||||||| |||||||||
Sbjct 2591623 GAATTTCTGGTACATTCAACTTCATAATTGTATTCAAGACAGAACACA---TCCTTATGC 2591679
Query 160338 ATCCGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGT 160375
| || ||||||||| | || || ||||| |||||| ||
Sbjct 2591680 ACCCATTCCACATGTTAGGCGTAGCTGGTGTATTCTGT 2591717
>seq8
Length=7641483
Score = 98.7 bits (108), Expect = 1e-15
Identities = 138/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 160601 ATCTGGTTCACTGCCCTTGGTGTTTCTACCATGGCATTCAATCTCAATGGTTTCAACTTC 160660
|| ||||| | ||| | ||| || ||| ||||| ||||| || || | |||| | ||
Sbjct 525067 ATTTGGTTTATTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGATTTCCATTTT 525126
Query 160661 AACCAGTCCATCTTGGACAACCAAGGACAAGTTCTGAACACTTGGGCAGACGTGCTTAAC 160720
||||| ||||| | ||||| | | | ||| | || | |||| | || | | |||
Sbjct 525127 AACCAATCCATAGTTGACAATCCGAGTCGTGTTATTAATATTTGGACTGATATCATCAAC 525186
Query 160721 CGCGCTGGTCTGGGCATGGAAGTCATGCACGAGCGTAACGCTCACAACTTCCCTCTCGAC 160780
| ||| ||| || |||||||| ||||| || ||||| ||| ||||||||||||| |||
Sbjct 525187 CATGCTAATCTTGGTATGGAAGTGATGCATGAACGTAATGCTTACAACTTCCCTCTAGAC 525246
Query 160781 CTTGCTGCTGCTGA 160794
| ||||| | |||
Sbjct 525247 TTAGCTGCAGTTGA 525260
>seq3
Length=8976907
Score = 98.7 bits (108), Expect = 1e-15
Identities = 149/211 (71%), Gaps = 5/211 (2%)
Strand=Plus/Plus
Query 160046 GAAGCCGCATCGCTCGACGAGTGGCTCTATAACGGTGGTCCTTTCCAACTCGTAGTC--- 160102
|||||||||| | || ||||| | || || || ||||||| | | || | ||
Sbjct 715733 GAAGCCGCATATGTTGATTAGTGGTTATACAATGGCGGTCCTTACGAGCTAATTGTTCTA 715792
Query 160103 TTC--CACTTCCTGATCGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACC 160160
||| |||||| | | || | | ||| |||| ||||||||||||||| || ||
Sbjct 715793 TTCTACACTTCTTAMTTGGTGTAGCTTGCTACATGGATCGTGAGTGGGAACTTAGTTTCC 715852
Query 160161 GTCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCTGCTTCTG 160220
|||| ||||||| ||| ||||| ||||||||| || ||||| || || |||||| |||
Sbjct 715853 GTCTGGGTATGCATCCTTGGATTGCTGTTGCATATTCAGCTCCTGTWGCAGCTGCTACTG 715912
Query 160221 CTGTATTCCTCGTCTACCCCTTCGGTCAGGG 160251
|||| || | |||||| | ||||| ||
Sbjct 715913 CTGTTTTATTGATCTACCTTATTGGTCAAGG 715943
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 551375862156000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |