Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq8 116 5e-21 seq2 116 5e-21 seq3 102 1e-16 seq19 96.9 4e-15 >seq8 Length=7641483 Score = 116 bits (128), Expect = 5e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 189647 GTATCTGGTTTACCGCCCTCGGCGTCAGCACCATGGCATTCAACCTCAATGGGTTCAACT 189706 |||| ||||||| || | || | || || ||||| |||||||| || | ||| | | Sbjct 525065 GTATTTGGTTTATTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGATTTCCATT 525124 Query 189707 TCAATCAATCCATTCTTGATGGTCAAGGTCGTGTTCTGAACACATGGGCAGACGTTCTCA 189766 | || |||||||| |||| || |||||||| | || | ||| | || | ||| Sbjct 525125 TTAACCAATCCATAGTTGACAATCCGAGTCGTGTTATTAATATTTGGACTGATATCATCA 525184 Query 189767 ACCGTGCTGGTCTTGGTATGGAAGTCATGCATGAGCGTAACGCTCACAACTTCCCTCTTG 189826 ||| |||| ||||||||||||||| |||||||| ||||| ||| ||||||||||||| | Sbjct 525185 ACCATGCTAATCTTGGTATGGAAGTGATGCATGAACGTAATGCTTACAACTTCCCTCTAG 525244 Query 189827 ATCTGGCAGCAG 189838 | | || |||| Sbjct 525245 ACTTAGCTGCAG 525256 >seq2 Length=11374105 Score = 116 bits (128), Expect = 5e-21 Identities = 130/171 (76%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 189177 CTACATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCTTGGATCTGC-A 189235 |||||||||||||||||||||||| || |||| | ||||||||||||||||| ||| Sbjct 4329606 CTACATGGGTCGTGAGTGGGAACTAAGTTTCCGTTTGGGTATGCGTCCTTGGAT-TGCTG 4329664 Query 189236 TTGCTTACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTGGTCTATCCTTTTGGTC 189295 |||| || || || ||||| ||||| || | || || || || |||| ||| |||||| Sbjct 4329665 TTGCATATTCAGCTCCTGTAGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTC 4329724 Query 189296 AAGGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAGTGGAACCTTCAACT 189346 |||| ||| ||||| | ||||| | || || ||| || ||||||| Sbjct 4329725 AAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACT 4329775 >seq3 Length=8976907 Score = 102 bits (112), Expect = 1e-16 Identities = 155/215 (72%), Gaps = 13/215 (6%) Strand=Plus/Plus Query 189094 GAAGCCGCCTCACTCGATGAGTGGCTCTACAACGGTGGTCCTTTCCAACTGGTAGTC--- 189150 |||||||| | | ||| ||||| | ||||| || ||||||| | | || | || Sbjct 715733 GAAGCCGCATATGTTGATTAGTGGTTATACAATGGCGGTCCTTACGAGCTAATTGTTCTA 715792 Query 189151 TTC--CACTTCCTCATCGGCATCTACGC---CTACATGGGTCGTGAGTGGGAACTCTCTT 189205 ||| |||||| | | || | || || |||||||| ||||||||||||||| || Sbjct 715793 TTCTACACTTCTTAMTTGG--TGTA-GCTTGCTACATGGATCGTGAGTGGGAACTTAGTT 715849 Query 189206 ACCGTCTCGGTATGCGTCCTTGGATCTGC-ATTGCTTACTCTGCACCTGTTGCAGCAGCA 189264 |||||| ||||||| ||||||||| ||| |||| || || || ||||| ||||| || Sbjct 715850 TCCGTCTGGGTATGCATCCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTWGCAGCTGCT 715908 Query 189265 TCCGCAGTCTTTCTGGTCTATCCTTTTGGTCAAGG 189299 | || || || || |||| | | |||||||||| Sbjct 715909 ACTGCTGTTTTATTGATCTACCTTATTGGTCAAGG 715943 >seq19 Length=3929835 Score = 96.9 bits (106), Expect = 4e-15 Identities = 76/91 (84%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 189737 GTGTTCTGAACACATGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGC 189796 ||||| | ||||| ||||| || || ||||||||||| |||||||||||||| |||| Sbjct 3082452 GTGTTATTAACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGC 3082511 Query 189797 ATGAGCGTAACGCTCACAACTTCCCTCTTGA 189827 |||| ||||| |||||||||||| |||| || Sbjct 3082512 ATGAACGTAATGCTCACAACTTCTCTCTAGA 3082542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634079841480000