Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spirodela_20polyrhiza_20[genbank_20GCA_5F001981405.1_202017-01-17] 20 sequences; 136,670,443 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq2 138 1e-27 seq6 129 7e-25 seq3 109 6e-19 seq19 100 3e-16 seq8 96.9 4e-15 seq7 84.2 2e-11 >seq2 Length=11374105 Score = 138 bits (152), Expect = 1e-27 Identities = 136/173 (79%), Gaps = 2/173 (1%) Strand=Plus/Plus Query 160896 TGCTACATGGGTCGCGAGTGGGAACTTTCCTACCGCCTCGGCATGCGCCCCTGGATCTGC 160955 |||||||||||||| ||||||||||| | ||| | || ||||| || ||||| ||| Sbjct 4329604 TGCTACATGGGTCGTGAGTGGGAACTAAGTTTCCGTTTGGGTATGCGTCCTTGGAT-TGC 4329662 Query 160956 -GTTGCATATTCTGCACCTGTTGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGG 161014 ||||||||||| || ||||| || ||||| | ||| || ||| | |||| ||| | || Sbjct 4329663 TGTTGCATATTCAGCTCCTGTAGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGG 4329722 Query 161015 TCAAGGTTCTTTCTCTGATGGTATGCCCCTGGGTATCTCTGGTACCTTCAACT 161067 |||||| ||| |||||||||||||| || || || |||||||| ||||||| Sbjct 4329723 TCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACT 4329775 >seq6 Length=8045491 Score = 129 bits (142), Expect = 7e-25 Identities = 123/157 (78%), Gaps = 3/157 (2%) Strand=Plus/Plus Query 160988 TGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGGTATGCCCCTGGG 161047 ||| || ||| | |||| ||| | |||||||| ||| ||||||||| || | || || Sbjct 2591564 TGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTTTCTGATGGTTTGTCTCTAGG 2591623 Query 161048 TATCTCTGGTACCTTCAACTTCATGCTTGTCTTCCAGGCAGAACACAACATCCTGATGCA 161107 || |||||||| ||||||||||| |||| ||| || |||||| ||||||| ||||| Sbjct 2591624 AATTTCTGGTACATTCAACTTCATAATTGTATTCAAGACAGAAC---ACATCCTTATGCA 2591680 Query 161108 CCCCTTCCACATGTTGGGTGTTGCTGGTGTCTTCGGT 161144 ||| ||||||||||| || || |||||||| ||| || Sbjct 2591681 CCCATTCCACATGTTAGGCGTAGCTGGTGTATTCTGT 2591717 >seq3 Length=8976907 Score = 109 bits (120), Expect = 6e-19 Identities = 153/212 (72%), Gaps = 7/212 (3%) Strand=Plus/Plus Query 160815 GAAGCTGCATCTCTTGATGAATGGCTCTACAATGGTGGTCCTTACCAACTGGTCGT---A 160871 ||||| |||| | ||||| | ||| | |||||||| ||||||||| | || | || | Sbjct 715733 GAAGCCGCATATGTTGATTAGTGGTTATACAATGGCGGTCCTTACGAGCTAATTGTTCTA 715792 Query 160872 TTT--CACTTCCTGATCGGCATCTTCTGCTACATGGGTCGCGAGTGGGAACTTTCCTACC 160929 || |||||| | | || | |||||||||| ||| |||||||||||| | || Sbjct 715793 TTCTACACTTCTTAMTTGGTGTAGCTTGCTACATGGATCGTGAGTGGGAACTTAGTTTCC 715852 Query 160930 GCCTCGGCATGCGCCCCTGGATCTGC-GTTGCATATTCTGCACCTGTTGCTGCTGCGAGT 160988 | || || |||| || ||||| ||| ||||||||||| || ||||| || ||||| | | Sbjct 715853 GTCTGGGTATGCATCCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTWGCAGCTGCTACT 715911 Query 160989 GCAGTATTCCTCGTCTATCCTTTCGGTCAAGG 161020 || || || | |||| | | | |||||||| Sbjct 715912 GCTGTTTTATTGATCTACCTTATTGGTCAAGG 715943 >seq19 Length=3929835 Score = 100 bits (110), Expect = 3e-16 Identities = 72/83 (87%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 161466 AACACCTGGGCTGACGTTCTGAATCGTGCTAACCTTGGTATGGAAGTAATGCACGAGCGT 161525 ||||| |||||||| || | || ||||||||||||||||||||||| ||||| || ||| Sbjct 3082460 AACACTTGGGCTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGT 3082519 Query 161526 AATGCTCACAACTTCCCTCTGGA 161548 ||||||||||||||| |||| || Sbjct 3082520 AATGCTCACAACTTCTCTCTAGA 3082542 >seq8 Length=7641483 Score = 96.9 bits (106), Expect = 4e-15 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 161368 GTATCTGGTTCACTGCACTTGGTGTCTCCACCATGGCATTCAACCTGAACGGATTCAACT 161427 |||| ||||| | ||| | ||| | || ||||| |||||||| |||| ||| | | Sbjct 525065 GTATTTGGTTTATTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGATTTCCATT 525124 Query 161428 TCAACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAACACCTGGGCTGACGTTCTGA 161487 | ||||| ||||| | || || | | || | || | ||| |||| | | | Sbjct 525125 TTAACCAATCCATAGTTGACAATCCGAGTCGTGTTATTAATATTTGGACTGATATCATCA 525184 Query 161488 ATCGTGCTAACCTTGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTGG 161547 | | |||||| |||||||||||||| ||||| || ||||||||| ||||||||||||| | Sbjct 525185 ACCATGCTAATCTTGGTATGGAAGTGATGCATGAACGTAATGCTTACAACTTCCCTCTAG 525244 Query 161548 ATCTCGCTGCTGCTGA 161563 | | ||||| | ||| Sbjct 525245 ACTTAGCTGCAGTTGA 525260 >seq7 Length=7914316 Score = 84.2 bits (92), Expect = 2e-11 Identities = 83/107 (78%), Gaps = 3/107 (3%) Strand=Plus/Plus Query 161243 TCAAGAAGAAGAGACCTACAACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATCTT 161302 |||||| |||| |||||||| || || ||||||| ||||| ||| || || ||||||| Sbjct 208909 TCAAGAGGAAGGAACCTACAATATTGTAGCTGCTCTTGGTTGCTTGGGCCGATTGATCTT 208968 Query 161303 CC---AATACGCTTCCTTCAACAACTCCCGTTCGTTGCACTTCTTCC 161346 || |||| ||| ||||||||||||| | | || ||||| |||| Sbjct 208969 CCCAAAATATGCTATTTTCAACAACTCCCATCCTTTACACTTGTTCC 209015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559327860168000