Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= AAMG01000750.1 Length=102 Score E Sequences producing significant alignments: (Bits) Value seq126137 86.0 3e-15 seq94143 86.0 3e-15 seq58914 86.0 3e-15 seq146480 71.6 6e-11 >seq126137 Length=4304 Score = 86.0 bits (94), Expect = 3e-15 Identities = 66/77 (86%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||| |||| ||||||| ||||| ||||||| |||||||||| |||||| || Sbjct 4221 GGAAAAGAAAACAACCGTGATTCCCCCAGTAGCGGCGAGCGAACAGGGAAAAGCCCATCG 4162 Query 61 CCGAATCCCCGCCCCGC 77 |||||| |||||| ||| Sbjct 4161 CCGAAT-CCCGCCGCGC 4146 >seq94143 Length=2716 Score = 86.0 bits (94), Expect = 3e-15 Identities = 66/77 (86%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||| |||| ||||||| ||||| ||||||| |||||||||| |||||| || Sbjct 2633 GGAAAAGAAAACAACCGTGATTCCCCCAGTAGCGGCGAGCGAACAGGGAAAAGCCCATCG 2574 Query 61 CCGAATCCCCGCCCCGC 77 |||||| |||||| ||| Sbjct 2573 CCGAAT-CCCGCCGCGC 2558 >seq58914 Length=2393 Score = 86.0 bits (94), Expect = 3e-15 Identities = 66/77 (86%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||| |||| ||||||| ||||| ||||||| |||||||||| |||||| || Sbjct 84 GGAAAAGAAAACAACCGTGATTCCCCCAGTAGCGGCGAGCGAACAGGGAAAAGCCCATCG 143 Query 61 CCGAATCCCCGCCCCGC 77 |||||| |||||| ||| Sbjct 144 CCGAAT-CCCGCCGCGC 159 >seq146480 Length=34444 Score = 71.6 bits (78), Expect = 6e-11 Identities = 51/59 (86%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGC 59 ||| |||||||| || ||||||||| ||||||||||||||||| |||| |||||||| Sbjct 24628 GGAGAAGAAACTTACAAGGATTCCCCTAGTAACGGCGAGTGAACCGGGAGCAGCCCAGC 24686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230077870560