Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq14 134 1e-26 >seq14 Length=755408349 Score = 134 bits (148), Expect = 1e-26 Identities = 543/844 (64%), Gaps = 25/844 (3%) Strand=Plus/Minus Query 61099 TACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATG 61158 ||||| ||||||| || ||||||||||| | |||||||| || | ||| ||| | Sbjct 132513095 TACAAGAAGGCGGTGGCCTCCTTCTGGACCGCCGAGGAGGTGGACCTCTCCTCCGACGCG 132513036 Query 61159 AATGACTGGGAG----CGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGC 61214 ||||||| || | || | || || | || ||||| || ||| | || Sbjct 132513035 CGCCACTGGGACACCACGCTC-TCCAACGACGAGCGCCACTTCATCTCCCACGTGCTCGC 132512977 Query 61215 GTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGA 61274 ||||| ||||| |||||||| ||||| ||||| | | ||| | || Sbjct 132512976 CTTCTTCGCCGCCTCGGACGGCATCGTGCTCGAGAACCTCGCCTCCAGGTTCATGTCCGA 132512917 Query 61275 GGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCA 61334 ||||| || | ||||| | ||||||||||||||||| ||||| ||||| |||| Sbjct 132512916 CGTGCAGGTCGCCGAGGCCAGGGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCA 132512857 Query 61335 CTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA-GCGGGCGGAACGTGAAC 61393 ||| ||||||||| | |||||||| || |||||| | || | | || | | || | Sbjct 132512856 CTCCGAGATGTACTCCCTGCTCATCGAGACCTACATCCGCGACGACGTCGAGAAG-GACC 132512798 Query 61394 GATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCA 61453 | | ||| |||||||| || ||||| || ||| || || || || |||||| | Sbjct 132512797 GCCTCTTCCGCGCCATCGACACCATACCCGCCGTGCGCCGCAAGGCCGACTGGGCCCTGC 132512738 Query 61454 ATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCG 61513 |||||| | || || || | || || | | || || || || | Sbjct 132512737 GCTGGATCGACGGT---GGGGAGCGCTTCGCCGAGCGCATCGTCGCCTTCGCCTGCGTGG 132512681 Query 61514 AGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTA 61573 |||| | || ||| || || || ||| ||||| ||| | ||||| || || || | Sbjct 132512680 AGGGCATCTTCTTCTCGGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGGCTCA 132512621 Query 61574 TGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATT 61633 |||| || || |||||| ||| ||| | || || |||||||||||| |||| || || | Sbjct 132512620 TGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCACTGCGACT 132512561 Query 61634 TTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTC-CGTCGGAGGAG---CGTGTG 61689 | || | || || ||| ||| | | || | | ||| ||| || || Sbjct 132512560 TCGC---CTGCCTCCTC-TACGACATCCTGCG---CGGCAAGCTGGACGAGTCACGCGTC 132512508 Query 61690 GGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATT--TCTGACTGACGCTTTGC 61747 ||||| || ||||| || ||||| ||| || |||| ||||| ||| Sbjct 132512507 TTCGAGATCGTCTCCGAGGCCGTGGACATCGAGAGGGAGTTCGTCTG--CGACGCGCTGC 132512450 Query 61748 CCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCG 61807 || | | ||| |||||||||| | | || ||| ||||| || || || || |||| Sbjct 132512449 CCTGCGCGCTCGTCGGCATGAACGGCGACCTGATGAGCCAGTACATCGAGTTCGTCGCCG 132512390 Query 61808 ACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATT 61867 |||| ||| | | | |||| ||| | | || || | | ||||| || || | Sbjct 132512389 ACCGCCTGCTCATGGCGCTGGGCTGCAAGAAGCTATACAACGCCACCAACCCGTTCGACT 132512330 Query 61868 TCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACT 61927 ||||| | || || ||| | |||||||| || || |||||||| || || ||||| | Sbjct 132512329 GGATGGAGCTCATCTCCCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTGGGCGAGT 132512270 Query 61928 ATCA 61931 | || Sbjct 132512269 ACCA 132512266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396845392081760