Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01]
149,134 sequences; 10,494,855,601 total letters
Query= NC_023503.1
Length=48800
Score E
Sequences producing significant alignments: (Bits) Value
seq135769 98.7 3e-16
>seq135769
Length=1163
Score = 98.7 bits (108), Expect = 3e-16
Identities = 219/326 (67%), Gaps = 2/326 (1%)
Strand=Plus/Plus
Query 2601 TAAAGTTCAATTGGTTGGTGACGACTTCTTCGTAACTAACACTGCTTACCTTGAAAAA-G 2659
|||| | ||||| || || || || || || || ||||| | | | |||||||| |
Sbjct 55 TAAAATACAATTAGTAGGAGATGATTTATTTGTTACTAATAAAAAT-ATTTTGAAAAAAG 113
Query 2660 GTATTGCAGAACACGCTGCTAACTCAATCCTTATCAAAGTTAACCAAATCGGTACTTTGA 2719
| ||| | || | ||| || |||| | || ||| | |||||||| || || || |
Sbjct 114 GAATTAAAAAAGGTGTTGCAAATGCAATTTTAATAAAACTAAACCAAATTGGAACATTAA 173
Query 2720 CTGAAACTTTTGACGCTATCGAAATGGCGAAAGAAGCTGGATACACAGCAGTAGTATCAC 2779
||||||| |||| |||| ||||||| ||| || | || | || | || |
Sbjct 174 CTGAAACAATTGAAACTATTAAAATGGCAAAAAAATTTAATTATGGTGTTGTTATTTCCC 233
Query 2780 ACCGTTCAGGTGAAACTGAAGATTCAACAATCGCTGATATTGCAGTTGCAACTAACGCTG 2839
| |||||||||||||| |||||| || |||| || ||| | |||| | ||| | |
Sbjct 234 ATCGTTCAGGTGAAACAGAAGATACATCAATAGCAGATTTATCAGTAGGAACAGCATCAG 293
Query 2840 GTCAAATTAAGACAGGTTCATTGTCACGTACTGACCGTATTGCTAAATACAACCAATTGC 2899
| ||||| || ||||| || || ||| |||| | | ||||| || || |||||
Sbjct 294 GACAAATCAAAACAGGATCTATGAGTCGTTCTGATAGAACAGCTAAGTATAATCAATTAA 353
Query 2900 TTCGTATCGAAGACCAACTTGGTGAA 2925
|| | || ||||| || | ||||||
Sbjct 354 TTAGAATAGAAGAAAAATTAGGTGAA 379
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 155762061259896
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |