Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20dicoccoides_20[genbank_20GCA_5F002162155.1_202017-06-01] 149,134 sequences; 10,494,855,601 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq135769 98.7 3e-16 >seq135769 Length=1163 Score = 98.7 bits (108), Expect = 3e-16 Identities = 219/326 (67%), Gaps = 2/326 (1%) Strand=Plus/Plus Query 2601 TAAAGTTCAATTGGTTGGTGACGACTTCTTCGTAACTAACACTGCTTACCTTGAAAAA-G 2659 |||| | ||||| || || || || || || || ||||| | | | |||||||| | Sbjct 55 TAAAATACAATTAGTAGGAGATGATTTATTTGTTACTAATAAAAAT-ATTTTGAAAAAAG 113 Query 2660 GTATTGCAGAACACGCTGCTAACTCAATCCTTATCAAAGTTAACCAAATCGGTACTTTGA 2719 | ||| | || | ||| || |||| | || ||| | |||||||| || || || | Sbjct 114 GAATTAAAAAAGGTGTTGCAAATGCAATTTTAATAAAACTAAACCAAATTGGAACATTAA 173 Query 2720 CTGAAACTTTTGACGCTATCGAAATGGCGAAAGAAGCTGGATACACAGCAGTAGTATCAC 2779 ||||||| |||| |||| ||||||| ||| || | || | || | || | Sbjct 174 CTGAAACAATTGAAACTATTAAAATGGCAAAAAAATTTAATTATGGTGTTGTTATTTCCC 233 Query 2780 ACCGTTCAGGTGAAACTGAAGATTCAACAATCGCTGATATTGCAGTTGCAACTAACGCTG 2839 | |||||||||||||| |||||| || |||| || ||| | |||| | ||| | | Sbjct 234 ATCGTTCAGGTGAAACAGAAGATACATCAATAGCAGATTTATCAGTAGGAACAGCATCAG 293 Query 2840 GTCAAATTAAGACAGGTTCATTGTCACGTACTGACCGTATTGCTAAATACAACCAATTGC 2899 | ||||| || ||||| || || ||| |||| | | ||||| || || ||||| Sbjct 294 GACAAATCAAAACAGGATCTATGAGTCGTTCTGATAGAACAGCTAAGTATAATCAATTAA 353 Query 2900 TTCGTATCGAAGACCAACTTGGTGAA 2925 || | || ||||| || | |||||| Sbjct 354 TTAGAATAGAAGAAAAATTAGGTGAA 379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155762061259896