Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= AAMG01001188.1 Length=621 Score E Sequences producing significant alignments: (Bits) Value seq84534 533 5e-149 seq253048 264 4e-68 seq191600 248 3e-63 >seq84534 Length=23021 Score = 533 bits (590), Expect = 5e-149 Identities = 459/564 (81%), Gaps = 3/564 (1%) Strand=Plus/Minus Query 40 TTTCGAGGCGTTCGCCGAGAAACGGCTTGACGAAGGATTTGCAGCTCGGTGATCTGCGCC 99 ||| |||||||| || ||| ||||| ||||||||| | |||| ||| |||||||||| Sbjct 12612 TTTTGAGGCGTTGGCGCTGAAGCGGCT-GACGAAGGACT-GCAGTTCGTTGATCTGCGCT 12555 Query 100 TTCTTTCTTGGCGTTGTCCGACAGCAGTTGCTCGCGGGACTGGGTCGCCACGGTCATGTA 159 ||||| ||||||||| || |||||||| ||||||| | |||||| || | |||||||| Sbjct 12554 TTCTT-CTTGGCGTTATCAGACAGCAGACGCTCGCGCGCCTGGGTTGCTGCCGTCATGTA 12496 Query 160 CTCGTCGTAGTTGCCCGGGAACAGGCGCAGCTCGCCGTAGTCCAGGTCAGCCATGTGGGT 219 ||||||||||||||||||| | | |||||||||||||||||| ||||| ||||||||||| Sbjct 12495 CTCGTCGTAGTTGCCCGGGTAAACGCGCAGCTCGCCGTAGTCGAGGTCGGCCATGTGGGT 12436 Query 220 ACACACGCTGTTCAGGAAGTGACGGTCGTGAGAGATGATGATCATCAGGCTGGAACGCTG 279 || || |||||||||||||||||||||| || ||||||||||| |||| ||||| Sbjct 12435 GCAGACCATGTTCAGGAAGTGACGGTCGTGCGAAATGATGATCATGGTGCTGTTACGCTC 12376 Query 280 GGTCAGGATATTTTCCAGCCAGCGGATGGTGTTGATGTCCAAGTGGTTGGTCGGTTCGTC 339 | |||| | | ||||||||||| ||||| | |||||||| || ||||||||||||||| Sbjct 12375 GTTCAGCACCTGCTCCAGCCAGCGAATGGTATCGATGTCCAGGTTGTTGGTCGGTTCGTC 12316 Query 340 GAGCAACAGCACTTCAGGATCGGAAAACAGCGCCTGGGCCAGCAATACACGCAGCTTCCA 399 ||||| ||| | ||| || | || ||||||||||| ||||||| || ||||| ||||| Sbjct 12315 GAGCAGCAGAATTTCCGGGTTAGAGAACAGCGCCTGTGCCAGCAGCACGCGCAGTTTCCA 12256 Query 400 GCCCGGGGACACTTCGCTCATCGGACCGAAGTGCTGCTCCAGCGGAATACCCAGACCCAG 459 ||| || | |||||||||||||| ||| |||||||||||||||||||||||| ||||| Sbjct 12255 GCCGGGAGCGACTTCGCTCATCGGGCCGTAGTGCTGCTCCAGCGGAATACCCACGCCCAG 12196 Query 460 CAGCAGCTCACCGGCACGGGATTCGGCGGTGTAGCCGTCCATCTCGGCGAACTCGGTTTC 519 |||||||||||||||||| | ||| ||||||||||||||||||||| | ||| ||| Sbjct 12195 CAGCAGCTCACCGGCACGCGCTTCTGCGGTGTAGCCGTCCATCTCGCCATACTTCTCTTC 12136 Query 520 CAGCTCGGCCACGGCCATGCCGTCTTCTTCGCTCATTTCCGGCAGCGAGTAAATACCATC 579 || || || || ||||||||||||||||| |||||||||| || || |||| Sbjct 12135 GAGGTCAGCGACTTTATAACCGTCTTCTTCGCTCATCTCCGGCAGCGCATAGATCGCATC 12076 Query 580 ACGCTCGGCCTTGACCTTCCACAG 603 ||||| |||| ||| |||||| Sbjct 12075 GCGCTCTTCCTTCACCGCCCACAG 12052 >seq253048 Length=9242 Score = 264 bits (292), Expect = 4e-68 Identities = 382/535 (71%), Gaps = 3/535 (1%) Strand=Plus/Minus Query 41 TTCGAGGCGTTCGCCGAGAAACGGCTTGACGAAGGATTTGCAGCTCGGTGATCTGCGCCT 100 || || ||||| || ||| ||||| ||||| |||| | || || | || || || | Sbjct 8065 TTTGATGCGTTAGCACTGAAGCGGCTA-ACGAAAGATT-GTAGTTCTGCAATTTGTGCTT 8008 Query 101 TCTTTCTTGGCGTTGTCCGACAGCAGTTGCTCGCGGGACTGGGTCGCCACGGTCATGTAC 160 |||| ||| || || || || || || |||| || || || || ||| | |||||||| Sbjct 8007 TCTT-CTTAGCATTATCAGAAAGTAGGCGCTCACGAGATTGCGTAGCCGCAGTCATGTAT 7949 Query 161 TCGTCGTAGTTGCCCGGGAACAGGCGCAGCTCGCCGTAGTCCAGGTCAGCCATGTGGGTA 220 || |||||||| || || ||| || | ||||| || |||| || ||||| ||||| Sbjct 7948 TCATCGTAGTTACCTGGATACACACGAATTTCGCCATAATCCAAATCGGCCATATGGGTG 7889 Query 221 CACACGCTGTTCAGGAAGTGACGGTCGTGAGAGATGATGATCATCAGGCTGGAACGCTGG 280 || || | || ||||||||||||||||| || || || | |||| || ||||| Sbjct 7888 CAGACCATATTTAGGAAGTGACGGTCGTGCGAAATAATAACCATCGTACTATCACGCTCA 7829 Query 281 GTCAGGATATTTTCCAGCCAGCGGATGGTGTTGATGTCCAAGTGGTTGGTCGGTTCGTCG 340 | | | | ||| | ||||||||| || | ||| || |||| |||||||||||| || Sbjct 7828 TTTAACGTTTGTTCTAACCAGCGGATCGTATCGATATCTAAGTTGTTGGTCGGTTCATCT 7769 Query 341 AGCAACAGCACTTCAGGATCGGAAAACAGCGCCTGGGCCAGCAATACACGCAGCTTCCAG 400 | | ||| | ||||| | ||||| || || ||||| || |||||||||||||||||| Sbjct 7768 AATAGCAGAATATCAGGGTTAGAAAAAAGTGCTTGGGCAAGTAATACACGCAGCTTCCAG 7709 Query 401 CCCGGGGACACTTCGCTCATCGGACCGAAGTGCTGCTCCAGCGGAATACCCAGACCCAGC 460 || || | ||||||||||| ||||| | || || | | ||| || | |||||| Sbjct 7708 CCTGGAGCGACTTCGCTCATTGGACCATAATGTAAATCGACCTCAATTCCGACACCCAGT 7649 Query 461 AGCAGCTCACCGGCACGGGATTCGGCGGTGTAGCCGTCCATCTCGGCGAACTCGGTTTCC 520 ||||| || || ||||| | ||| ||| ||||||| ||||| || || || ||| Sbjct 7648 AGCAGTTCTCCCGCACGCGCTTCAGCGCTGTAGCCATCCATTTCACCGTACAGAACTTCG 7589 Query 521 AGCTCGGCCACGGCCATGCCGTCTTCTTCGCTCATTTCCGGCAGCGAGTAAATAC 575 || ||||| || ||| |||||||| ||||||||||||| | |||||||| Sbjct 7588 AGATCGGCGACCTTATAGCCCTCTTCTTCACTCATTTCCGGCAATGCGTAAATAC 7534 >seq191600 Length=3358 Score = 248 bits (274), Expect = 3e-63 Identities = 268/351 (76%), Gaps = 3/351 (1%) Strand=Plus/Plus Query 40 TTTCGAGGCGTTCGCCGAGAAACGGCTTGACGAAGGATTTGCAGCTCGGTGATCTGCGCC 99 ||| |||||||| || ||||| || |||||| |||| || || | |||||||| Sbjct 725 TTTAGAGGCGTTGGCGCTAAAACGACT-GACGAACGATTGTAAG-TCAGCAATCTGCGCT 782 Query 100 TTCTTTCTTGGCGTTGTCCGACAGCAGTTGCTCGCGGGACTGGGTCGCCACGGTCATGTA 159 || |||||||||||| || || | ||| | || || | |||||||||| ||||||| || Sbjct 783 TT-TTTCTTGGCGTTATCGGATAACAGACGTTCACGCGCCTGGGTCGCCGCGGTCATATA 841 Query 160 CTCGTCGTAGTTGCCCGGGAACAGGCGCAGCTCGCCGTAGTCCAGGTCAGCCATGTGGGT 219 ||||| || || || | | | ||||||||||| || |||| ||||||||||| || Sbjct 842 TTCGTCATAATTACCGGAATAAACCCGCAGCTCGCCATAATCCAAATCAGCCATGTGCGT 901 Query 220 ACACACGCTGTTCAGGAAGTGACGGTCGTGAGAGATGATGATCATCAGGCTGGAACGCTG 279 ||| || | || |||||||||||||| || || ||||| ||||| |||| ||||| Sbjct 902 ACAGACCATATTAAGGAAGTGACGGTCATGCGAAATGATAATCATGGTGCTGTCACGCTC 961 Query 280 GGTCAGGATATTTTCCAGCCAGCGGATGGTGTTGATGTCCAAGTGGTTGGTCGGTTCGTC 339 | |||| | | ||||||||||| || || | |||||||| || ||| ||||||||||| Sbjct 962 GTTCAGCACCTGCTCCAGCCAGCGAATAGTATCGATGTCCAGGTTGTTCGTCGGTTCGTC 1021 Query 340 GAGCAACAGCACTTCAGGATCGGAAAACAGCGCCTGGGCCAGCAATACACG 390 ||| ||||| | ||||||| |||||||||||||| ||||||| ||||| Sbjct 1022 GAGTAACAGAATATCAGGATTAGAAAACAGCGCCTGCGCCAGCAGCACACG 1072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1871913115716