Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= AAMG01001449.1 Length=395 Score E Sequences producing significant alignments: (Bits) Value seq403199 273 5e-71 seq87078 223 8e-56 seq429702 127 5e-27 seq176656 116 9e-24 >seq403199 Length=243 Score = 273 bits (302), Expect = 5e-71 Identities = 208/242 (86%), Gaps = 4/242 (2%) Strand=Plus/Minus Query 4 CGGCACCGGCACGGTGTGGAAGGGCGGCCTGTTCCCGTTCCTGTTCATCACCATTGCCTG 63 |||| |||| ||||||||||||||||| ||||||||||||||||||||||||| ||||| Sbjct 240 CGGCGACGGCCCGGTGTGGAAGGGCGGCATGTTCCCGTTCCTGTTCATCACCATCGCCTG 181 Query 64 TGGCGCGGTCTCGGGTTTCCATGCGCTGATCTCCTCGGGCACCACGCCCAAGTTGCTCGC 123 |||||||| || || |||||||| ||||||||||||||||||||||||||| ||||||| Sbjct 180 CGGCGCGGTGTCCGGCTTCCATGCCCTGATCTCCTCGGGCACCACGCCCAAGCTGCTCGC 121 Query 124 CAGTGAGA-GC-CATGCCCGTTACATCGGTTACGGCGGCATGCTGATGGAGTCGTTCGTG 181 || ||| || ||||| | |||||||| |||||||||||||||||||| ||||||||| Sbjct 120 CAATGAATCGCACATGCGC--TACATCGGCTACGGCGGCATGCTGATGGAATCGTTCGTG 63 Query 182 GCCATCATGGCGATGGTTGCCGCCTCGGTGATTGAGCCCGGCGTGTACTTCGCCATGAAC 241 || | |||||| |||| ||||||||| | || || || ||| | |||||||| |||||| Sbjct 62 GCAGTGATGGCGCTGGTGGCCGCCTCGATCATCGATCCGGGCATCTACTTCGCGATGAAC 3 Query 242 AG 243 || Sbjct 2 AG 1 >seq87078 Length=7927 Score = 223 bits (246), Expect = 8e-56 Identities = 200/251 (80%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 2 GACGGCACCGGCACGGTGTGGAAGGGCGGCCTGTTCCCGTTCCTGTTCATCACCATTGCC 61 ||||||||||| || ||||||| || | ||||||||||||||||| |||||||| ||| Sbjct 6861 GACGGCACCGGGCCGCTGTGGAAAGGGGCGCTGTTCCCGTTCCTGTTTATCACCATCGCC 6920 Query 62 TGTGGCGCGGTCTCGGGTTTCCATGCGCTGATCTCCTCGGGCACCACGCCCAAGTTGCTC 121 || || || ||||| || ||||| ||||||||| |||| ||||| ||||| ||| |||| Sbjct 6921 TGCGGTGCCGTCTCCGGCTTCCACGCGCTGATCGCCTCCGGCACTACGCCAAAGCTGCTG 6980 Query 122 GCCAGTGAGAGCCATGCCCGTTACATCGGTTACGGCGGCATGCTGATGGAGTCGTTCGTG 181 ||| | || | | |||| || | || || ||||||| |||||||||||||| || ||| Sbjct 6981 GCCTGCGAAACCGATGCGCGCTTTATTGGCTACGGCGCGATGCTGATGGAGTCCTTTGTG 7040 Query 182 GCCATCATGGCGATGGTTGCCGCCTCGGTGATTGAGCCCGGCGTGTACTTCGCCATGAAC 241 || | |||||| |||| || || ||| | |||||||| ||| | ||||| ||||||||| Sbjct 7041 GCGGTGATGGCGCTGGTGGCGGCATCGATTATTGAGCCGGGCCTCTACTTTGCCATGAAC 7100 Query 242 AGCCCGGCTGC 252 | |||| |||| Sbjct 7101 ACCCCGCCTGC 7111 >seq429702 Length=267 Score = 127 bits (140), Expect = 5e-27 Identities = 141/188 (75%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 65 GGCGCGGTCTCGGGTTTCCATGCGCTGATCTCCTCGGGCACCACGCCCAAGTTGCTCGCC 124 ||||| |||| || |||||||||||| ||||| ||||||||||| || || | | Sbjct 2 GGCGCCATCTCCGGCTTCCATGCGCTGGTCTCCAGCGGCACCACGCCAAAACTGGTGGAG 61 Query 125 AGTGAGAGCCATGCCCGTTACATCGGTTACGGCGGCATGCTGATGGAGTCGTTCGTGGCC 184 | || || ||| ||| | || || || |||| ||||||||||| || || ||||| Sbjct 62 CGGGAAAGTCATATCCGCTTTATTGGCTATGGCGCGATGCTGATGGAATCCTTTGTGGCG 121 Query 185 ATCATGGCGATGGTTGCCGCCTCGGTGATTGAGCCCGGCGTGTACTTCGCCATGAACAGC 244 ||||||||| || || ||||| ||| | || || ||||| ||||| ||||||||| | Sbjct 122 ATCATGGCGCTGATTTGTGCCTCAGTGCTCGATCCGGGCGTCTACTTTGCCATGAACTCC 181 Query 245 CCGGCTGC 252 |||||||| Sbjct 182 CCGGCTGC 189 >seq176656 Length=15515 Score = 116 bits (128), Expect = 9e-24 Identities = 169/238 (71%), Gaps = 3/238 (1%) Strand=Plus/Minus Query 17 GTGTGGAAGGGCGGCCTGTTCCCGTTCCTGTTCATCACCATTGCCTGTGGCGCGGTCTCG 76 || ||||| |||| || || || ||| | || || |||||||||||||||||||| || Sbjct 13070 GTATGGAAAGGCGCGCTTTTTCCTTTCTTATTTATTACCATTGCCTGTGGCGCGGTATCC 13011 Query 77 GGTTTCCATGCGCTGATCTCCTCGGGCACCACGCCCAAGTTGCTCGCCAGTGAGAGCCAT 136 |||||||| || | || ||| || ||||| || || ||||| || | ||| | | Sbjct 13010 GGTTTCCACGCCTTAATTTCCAGTGGTACCACACCTAAATTGCTGGCTAATGAAACAGAC 12951 Query 137 GCCCGTTACATCGGTTACGGCGGCATGCTGATGGAGTCGTTCGTGGCCATCATGGCGATG 196 || || | || ||||| |||| ||| ||||||| || ||||| || | ||||| | Sbjct 12950 GCGCGATTTATTGGTTATGGCGCTATGTTGATGGAATCATTCGTTGCATTGATGGCATTA 12891 Query 197 GTTGCCGCCTCGGTGATTGAGCCCGGCGTGTACTTCGCCATGAACA---GCCCGGCTG 251 || ||||| || | ||||| || || | || || || ||||| | |||||||| Sbjct 12890 GTCTCCGCCGCGATTATTGAACCAGGATTATATTTTGCAATGAATACGCCCCCGGCTG 12833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1155801048864