Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq198834 226 3e-57 seq74417 170 2e-40 seq155803 158 1e-36 seq241776 156 5e-36 seq240657 118 1e-24 seq161299 118 1e-24 seq14600 93.3 5e-17 seq57289 84.2 3e-14 >seq198834 Length=8127 Score = 226 bits (250), Expect = 3e-57 Identities = 179/214 (84%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 6702 CTAGAAACCAACAAAATAGAACCGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 6761 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 ||||| |||||||||||||||||||||||||||||||||||| |||||||||| || || Sbjct 6762 GGCGTTTGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAATTCCTGGTTCCACCCCA 6821 Query 126 CACCAATGAA--GGCATACGGGCTCACCAAGAGGTAGGGCTGGGTAATGCAGTACTCGCC 183 |||| | || ||||| || ||||||| |||||| ||| || |||||| | || Sbjct 6822 CACCCAGTAAAGGGCATGAGGTCTCACCAGGAGGTAAGGCCCGGCCGGACAGTACACACC 6881 Query 184 GTGAGGCGGACCATAGCACCCAGCCCGAGTTTCG 217 || ||||||||||| | || |||||| |||| Sbjct 6882 GTAAGGCGGACCATCCCGCCAGGCCCGAAGTTCG 6915 >seq74417 Length=3132 Score = 170 bits (188), Expect = 2e-40 Identities = 173/219 (79%), Gaps = 5/219 (2%) Strand=Plus/Minus Query 1 CGTCTCTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGT 60 |||||||||||||||||||||||| ||||||| |||||| |||||||||||||||| || Sbjct 2777 CGTCTCTAGAAACCAACAAAATAGAAACGCACGCCCTATTTTATTATTCCATGCTAACGT 2718 Query 61 ATTCGGGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCT 120 ||||| || | |||||||||||||||||||||||| |||| |||||||||||| |||| Sbjct 2717 ATTCGAGCAAAGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAAAGTCCTGATTCCC 2658 Query 121 CCGCAC-ACCAATGAA-GGCATACGGGCTCACCAAGAGGTAGGGCTGGGTAATGCAGTAC 178 | |||| ||| |||| ||||| || || || ||| ||| | || ||| | Sbjct 2657 CAGCACGCCCAGTGAAGGGCAT-GAGGTTCTTCAGAAGGAAGGCCCGGCCGGACGAGTGC 2599 Query 179 TCGCCGTGAGGCGGACCATAGCACCCA-GCCCGAGTTTC 216 ||| |||||||||||| || ||| |||| |||||| Sbjct 2598 ACGCGGTGAGGCGGACC-CGCCAGCCAGGCCCAAGTTTC 2561 >seq155803 Length=549 Score = 158 bits (174), Expect = 1e-36 Identities = 153/193 (79%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| | ||||||||||||||||||||||||||||||||| || Sbjct 288 CTAGAAACCAACAAAATAGAACCACACGTCCTATTCTATTATTCCATGCTAATGTATCCG 347 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || |||||||||||||||||||||||| |||| ||||||||||||||| | ||| Sbjct 348 AGCAATTGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAAAGTCCTGGTTTCCTAGCA 407 Query 126 CACCAATGAA--GGCATACGGGCTCACCAAGAGG-TAGGGCTGGGTAATGCAGTACTCGC 182 |||| | || ||||| | || |||||||| || | | | |||||| ||| Sbjct 408 CACCCAGTAAAGGGCAT-GTAGTTCCCCAAGAGGAAAGCTCCAGCCAGACCAGTACACGC 466 Query 183 CGTGAGGCGGACC 195 |||||||||||| Sbjct 467 GGTGAGGCGGACC 479 >seq241776 Length=8464 Score = 156 bits (172), Expect = 5e-36 Identities = 105/116 (91%), Gaps = 1/116 (1%) Strand=Plus/Minus Query 5 TCTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTC 64 |||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||| Sbjct 8167 TCTAGAAACCAACAAAATAGAACCGCACGTCCTATTCTGTTATTCCATGCTAATATATTC 8108 Query 65 GGGCGTA-AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCC 119 |||| || |||||||||||||||||||||||| |||| |||| |||||||||||| Sbjct 8107 GGGCCTATGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAATAGTCCTGGTTCC 8052 >seq240657 Length=9895 Score = 118 bits (130), Expect = 1e-24 Identities = 97/116 (84%), Gaps = 3/116 (3%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCA-CGTCCTATTCTATTATTCCATGCTAATGTATTCGGGC 68 |||||||| ||| ||| |||| |||||||||| ||||||||||||||| |||||| || Sbjct 2915 AAACCAACGAAACAGGATCGCAACGTCCTATTCCCTTATTCCATGCTAATCTATTCGAGC 2974 Query 69 G--TAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCC 122 || |||||||||||||||||||||||| |||| ||||| ||||||||| || Sbjct 2975 CGTTAGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAATTCCCTGGTTCCCCC 3030 >seq161299 Length=384 Score = 118 bits (130), Expect = 1e-24 Identities = 86/100 (86%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||| Sbjct 100 CTAGAAACCAACAAAATAGAACCACACGTCCTATTTCATTATTCCATGCTAATGTATTCG 41 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTA 105 || || |||||| | || |||||||||||| |||| ||| Sbjct 40 AGCATAGGCCTGCCTGGAGCACTCTAATTTTTTCAAAGTA 1 >seq14600 Length=9614 Score = 93.3 bits (102), Expect = 5e-17 Identities = 82/100 (82%), Gaps = 2/100 (2%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| | || | ||||||||| |||||||||||| ||||| ||| Sbjct 7236 AAACCAACAAAATAGAGCCG-AGGTCCTATTCCATTATTCCATGCACCATTATTCATGCG 7178 Query 70 TAA-GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAA 108 | | || |||||||| |||||||||||| |||| |||||| Sbjct 7177 TCACGCATGCTTTGAGCACTCTAATTTTTTCAAAGTAAAA 7138 >seq57289 Length=4318 Score = 84.2 bits (92), Expect = 3e-14 Identities = 79/98 (81%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | ||||||||||||||||||| | | ||||| Sbjct 4261 CCAACAGAATAGGACCGGAA-TCCTATGATGTTATTCCATGCTAATGTATCCAGAGCGTA 4203 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||| ||||||||||| |||| |||| || Sbjct 4202 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 4165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592321491714