Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= AAMG01001688.1 Length=394 Score E Sequences producing significant alignments: (Bits) Value seq62501 147 5e-33 seq24576 147 5e-33 seq468359 100 7e-19 >seq62501 Length=10902 Score = 147 bits (162), Expect = 5e-33 Identities = 280/406 (69%), Gaps = 21/406 (5%) Strand=Plus/Minus Query 1 CGATGGTCAGCAACTCGCCGCCCACCTGGGTCCACGCCAGGCCAGTGACCTGACCGACTT 60 |||| |||||||| ||||| ||||| | |||||| ||||| || || |||||||| || Sbjct 7223 CGATAGTCAGCAAATCGCCACCCACTTCGGTCCATGCCAGACCCGTTACCTGACCCACAC 7164 Query 61 GATCCT-GCTGCTCGGCCAGGCCGTAGCTGAATTTGCGC---ACGCCGAGGAAGTGCTCC 116 | | | |||| || || | |||||| ||| |||| ||||| ||||| | || Sbjct 7163 GGTTTTCGCTG-TCCGCACGACCGTAGTCGAA---GCGCTGAACGCCCAGGAAATCCTTG 7108 Query 117 AGGGAGTCGGCCGTGACCTTCACCGAGAAGCGTTTT-------TCCAGC-GCATGTTCCT 168 ||| ||| | ||| | || || |||| |||| | ||| | | Sbjct 7107 AGGTTTTCGCCATTGATAGT----GATGTGCTTTTTCGTCTTGTCCATCAGCA-GCGATT 7053 Query 169 TGACCGCCTTGCGGCAGATCTTCGCGATCTGGCGCTCCAGGCCACGCACACCGGCTTCGC 228 | ||||| || ||||| | |||| | || ||||| |||| ||||||||||||||| | Sbjct 7052 TAACCGCTTTACGGCACAGTTTCGACAGCTCACGCTCAAGGCTACGCACACCGGCTTCAC 6993 Query 229 GGGTGTAGTAGCGGACGATGTCGCGGATCGTGCCGACTTCAAATTCGATCTCGCCCTTCT 288 |||||||||| |||| ||| | |||| || | |||||| || || | Sbjct 6992 GGGTGTAGTAACGGATAATGCCCACAATCGCGCTGTCTTCAACCGTAATTTCATTGGCTT 6933 Query 289 TCAGGCCATTGGCCGAAATCTGCTTGGGCGCGAGGTACTTGATGGCGATGTTGATCTTCT 348 ||||| ||||| | ||||||||||| | || | || | |||||||| | || | Sbjct 6932 TCAGGGCATTGCGCTCAATCTGCTTGGTCAGCAGATGCTGCTTAGCGATGTTCAGTTTTT 6873 Query 349 CGTCTTCGGTGTAACCCGGCAGGCGAATCACTTCCATCCGGTCCAG 394 | |||||||||||||||| ||| |||||||||||||| |||||||| Sbjct 6872 CATCTTCGGTGTAACCCGACAGACGAATCACTTCCATACGGTCCAG 6827 >seq24576 Length=37798 Score = 147 bits (162), Expect = 5e-33 Identities = 276/401 (69%), Gaps = 15/401 (4%) Strand=Plus/Minus Query 3 ATGGTCAGCAACTCGCCGCCCACCTGGGTCCACGCCAGGCCAGTGACCTGACCGACTTGA 62 |||||||||| ||||||||||| | ||||| ||||| || || ||||||||||| | Sbjct 8072 ATGGTCAGCAGATCGCCGCCCACTTCCGTCCATGCCAGACCGGTCACCTGACCGACGCGG 8013 Query 63 TCCT-GCTGCTCGGCCAGGCCGTAGCTGAATTTGCGCACGCCGAGGAAGTGCTCCAGGGA 121 | | |||| ||||| | |||||| ||| |||| |||||||| | | ||| Sbjct 8012 TTTTCGCTG-TCGGCACGACCGTAGTCGAAACGCTGCACCCCGAGGAAATCTTTCAGATT 7954 Query 122 GTCGGCCGTGACCTTCACCGAGAAGCGT-------TTTTCCAGC-GCATGTTCCTTGACC 173 |||||| ||| | ||| | | | || |||| | ||| | | || ||| Sbjct 7953 GTCGGCGTTGATTT----CGATATGTTTGATCGACTTATCCATCAGCAGGGTT-TTCACC 7899 Query 174 GCCTTGCGGCAGATCTTCGCGATCTGGCGCTCCAGGCCACGCACACCGGCTTCGCGGGTG 233 ||||| ||||| | ||| | | | ||||| |||| |||||| || ||||| |||||| Sbjct 7898 GCCTTACGGCACAGCTTGGACAGTTCACGCTCAAGGCTACGCACGCCCGCTTCACGGGTG 7839 Query 234 TAGTAGCGGACGATGTCGCGGATCGTGCCGACTTCAAATTCGATCTCGCCCTTCTTCAGG 293 ||||| || | |||| | ||| | || | | || | | ||| |||||||| Sbjct 7838 TAGTAACGAATGATGCCAACGATGGCGCTGTCGTCCACGGTCAGCTCATTTTTCTTCAGC 7779 Query 294 CCATTGGCCGAAATCTGCTTGGGCGCGAGGTACTTGATGGCGATGTTGATCTTCTCGTCT 353 ||||| | ||||||||||| | |||| || | || || |||| || ||||| Sbjct 7778 GCATTGCGCTCAATCTGCTTGGACAGCAGGTGCTGCTTAGCAATATTGAGTTTTTCGTCC 7719 Query 354 TCGGTGTAACCCGGCAGGCGAATCACTTCCATCCGGTCCAG 394 |||||||| || | |||||||||||||||||| || ||||| Sbjct 7718 TCGGTGTAGCCGGACAGGCGAATCACTTCCATACGATCCAG 7678 >seq468359 Length=360 Score = 100 bits (110), Expect = 7e-19 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 287 CTTCAGGCCATTGGCCGAAATCTGCTTGGGCGCGAGGTACTTGATGGCGATGTTGATCTT 346 ||||||||| |||||| |||||||| |||| ||||| | | |||||||||| ||| Sbjct 358 CTTCAGGCCGTTGGCCTTGATCTGCTTCGGCGACAGGTAACGGGTAGCGATGTTGAGCTT 299 Query 347 CTCGTCTTCGGTGTAACCCGGCAGGCGAATCACTTCCATCCGGTCCAG 394 ||| || |||||||| || || | ||| ||||||||||| |||||||| Sbjct 298 CTCATCCTCGGTGTAGCCGGGGATGCGGATCACTTCCATGCGGTCCAG 251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1152617023936