Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_007902.1 Length=52162 Score E Sequences producing significant alignments: (Bits) Value seq290127 113 1e-20 seq169058 107 6e-19 seq255306 87.8 6e-13 seq25856 87.8 6e-13 >seq290127 Length=10489 Score = 113 bits (124), Expect = 1e-20 Identities = 350/525 (67%), Gaps = 20/525 (4%) Strand=Plus/Minus Query 23577 CGTT-AACCAGCTCCAGCATATCACGGGTACGAATGTGCTTCTGCACCAGTTCCAGCAGC 23635 |||| |||||| || || ||| ||| | |||| || ||||||| ||| ||| Sbjct 5379 CGTTCAACCAGTTCTGCCAGATCCCGGTGATGAATATGTTTCTGCAGCAGGGTCAGGGCG 5320 Query 23636 GCCACCCGGCGATGGGTCAGG-ATTTCGTCATCCGGTATTGCAGTGATATCGACCAGCGG 23694 |||| | ||| ||| || | |||||||||||||| || | || | || |||||||| Sbjct 5319 GCCATACTGCGGTGG-TCTGCTATTTCGTCATCCGGGATCACTGTAACGTCAACCAGCGG 5261 Query 23695 AAATGC-CTGATGATAAACCGTGGCCGCCAATTCTGGCTCAGCAAAACAGTCCAGACAGC 23753 || || || || || | || | |||| || || || ||| ||||| || | Sbjct 5260 GAAGGCAGTGCTG-TAGAGTCTGCCTGCCAGCTCCGGATCGTTAAACTCATCCAGCCACC 5202 Query 23754 GCGTGCTGTACGGATACGG-CGACGTGGTGCCGTGGTAAAACAGCAGCGGAATGACCACC 23812 | ||| ||| |||||||| | |||| |||| || ||||||| ||| ||||||| Sbjct 5201 GGGTGGAGTAGGGATACGGACTACGTTTCCCCGT-ATAGAACAGCACCGGTATGACCAGG 5143 Query 23813 GGTAGCTGATCGTTGCCCTG-TTCTAGATGCCGCTGCATCGCGGCGACCGCATACCGTAG 23871 || | | | ||||||| || | || |||||||| ||||| |||||||| || | Sbjct 5142 GGCA-ATTTTTTATGCCCTGCCTCGATGTGGCGCTGCATGGCGGCCACCGCATAGCGCAC 5084 Query 23872 CAATCGAAACGCCATCAGCTTTTCCGGGCG-GCTCTGGTGCTCTATCAGACAGTAGACGT 23930 || ||||| ||||| || | | |||||| ||| ||||| || || || |||| Sbjct 5083 CAGACGAAAAGCCATATGCCTGT-CGGGCGAAGACTGATGCTCGATGAGCACGTGAACGT 5025 Query 23931 AACCATCATGGCCCGTCGTGGTCTTCATCGAGTAGAGCATATC---CGAGCACTGGCCCT 23987 | |||||| || | | ||| |||| ||| || | || || |||||| Sbjct 5024 ATCCATCA---CCTGCAGAGGTTTTCAGGCTGTAAAGGACGTCGCTGAAGTACTGGC--- 4971 Query 23988 TCAGGTCGTCTTCGATAAATGAGCCGGAAGCCATCGCCAATGTGCCGAAATCGCAGCGCT 24047 || ||||| |||| || |||||||| | | | || |||| || ||||||| Sbjct 4970 GGAGATCGTCCTCGACGAACGAGCCGGATTCGAGCTTCAGCGTGCTGAGATCGCAGATGG 4911 Query 24048 TACGCAGGTGCGGCGGCAGATGGATTTCCAGAAAGTCCCGAGCGA 24092 ||||| | | |||||| |||||||||| ||| || || |||| Sbjct 4910 CGCGCAGCTCTGCCGGCAGGTGGATTTCCATAAAATCACGGGCGA 4866 >seq169058 Length=7535 Score = 107 bits (118), Expect = 6e-19 Identities = 326/491 (66%), Gaps = 17/491 (3%) Strand=Plus/Plus Query 23607 GAATGTGCTTCTGCACCAGTTCCAGCAGCGCCACCCGGCGATGGGTCAG-GATTTCGTCA 23665 |||| || ||||||| |||| ||| |||| | ||| ||| || | |||||||||| Sbjct 6427 GAATATGTTTCTGCAGCAGTGTCAGGGCGGCCATGCTGCGGTGG-TCTGCGATTTCGTCA 6485 Query 23666 TCCGGTATTGCAGTGATATCGACCAGCGGAAATGC-CTGATGATAAACCGTGGCCGCCAA 23724 || || || | || | || |||||||| | || ||| || || | || | |||| Sbjct 6486 TCAGGAATGACGGTTACGTCAACCAGCGGGAGGGCGCTGCTG-TAGAGTCTGCCTGCCAG 6544 Query 23725 TTCTGGCTCAGCAAAACAGTCCAGACAGCGCGTGCTGTACGGATAC-GGCGACGTGGTGC 23783 || || || |||| ||||| || || ||| ||| |||||| ||| ||| | Sbjct 6545 CTCCGGGTCGTCAAACTCATCCAGCCACCGGGTGGAGTAGGGATACGGGCTGCGTTTACC 6604 Query 23784 CGTGGTAAAACAGCAGCGGAATGACCACCGGTAGCTGATCGTTGCCCTGTTCTAGATGCC 23843 ||| || ||||||| ||| || |||| || |||| | | |||| || || || | Sbjct 6605 CGT-ATAGAACAGCACCGGTATCACCAGGGGCAGCTTTTTATGGCCCGCCTCCAGGTGAC 6663 Query 23844 GCTGCATCGCGGCGACCGCATACCGTAGCAATCGAAACGCCATCAGCTTTTCCGGGCG-G 23902 ||||||| || || |||||||| |||| || ||||| ||||| || | | |||||| Sbjct 6664 GCTGCATGGCCGCCACCGCATAGCGTATCAGACGAAAAGCCATATGCCTGT-CGGGCGAA 6722 Query 23903 CTCTGGTGCTCTATCAGACAGTAGACGTAACCATCATGGCCCGTCGTGGTCTTCATCGAG 23962 ||| ||||| || || || ||||| ||||| || | | ||| |||| | Sbjct 6723 GACTGATGCTCGATGAGCACGTGAACGTAGCCATC---TCCGGCTGCGGTTTTCAGGCTG 6779 Query 23963 TAGAGCATATC---CGAGCACTGGCCCTTCAGGTCGTCTTCGATAAATGAGCCGGAAGCC 24019 || || | ||| || |||||| || ||||| |||| || |||||||| | Sbjct 6780 TAAAGAACATCGCTGAAGTACTGGC---GGAGATCGTCCTCGACGAACGAGCCGGACTCG 6836 Query 24020 ATCGCCAATGTGCCGAAATCGCAGCGCTTACGCAGGTGCGGCGGCAGATGGATTTCCAGA 24079 | | || |||| || ||||||| ||||| | | ||||| |||| ||||| | Sbjct 6837 AGCTTCAGCGTGCTGAGATCGCAGATGGCGCGCAGTTCTGCGGGCAGGTGGAGTTCCATA 6896 Query 24080 AAGTCCCGAGC 24090 || || || || Sbjct 6897 AAATCACGGGC 6907 >seq255306 Length=12771 Score = 87.8 bits (96), Expect = 6e-13 Identities = 247/368 (67%), Gaps = 10/368 (3%) Strand=Plus/Plus Query 23607 GAATGTGCTTCTGCACCAGTTCCAGCAGCGCCACCCGGCGATGGGTCAG-GATTTCGTCA 23665 ||||||| ||||||| ||| ||| ||||| | ||||||| || | |||| | || Sbjct 10717 GAATGTGTTTCTGCAGCAGGGTCAGTGCCGCCAAACTGCGATGG-TCTGCGATTACATCG 10775 Query 23666 TCCGGTATTGCAGTGATATCGACCAGCGGAAA-TGCCTGATGATAAACCGTGGCCGCCAA 23724 || | ||| | |||| ||| ||||| ||||| || || || |||| | | ||||| | Sbjct 10776 TCAGATATAACGGTGACATCAACCAGGGGAAAATGACTACTG-TAAAGCTTCGCCGCTAG 10834 Query 23725 TTCTGGCTCAGCAAAA--CAGTCCAGACAGCGCGTGCTGTACGGATACGGCG-ACGTGGT 23781 | || | | ||||| || |||| |||| || || |||||||| | ||| Sbjct 10835 CGCCGGATTA-CAAAATTCA-TCCAACCAGCAGGTTGAATAGGGATACGGGGTACGCTTC 10892 Query 23782 GCCGTGGTAAAACAGCAGCGGAATGACCACCGGTAGCTGATCGTTGCCCTGTTCTAGATG 23841 || | || ||||||| || || |||| || |||| | | |||| || ||||| Sbjct 10893 CCCATA-TAGAACAGCACGGGTATTACCAATGGCAGCTTTTTATGGCCCGCATCAAGATG 10951 Query 23842 CCGCTGCATCGCGGCGACCGCATACCGTAGCAATCGAAACGCCATCAGCTTTTCCGGGCG 23901 ||||||||| | || || |||||||| | ||| | || ||||| | || || ||| Sbjct 10952 CCGCTGCATTGATGCTACTGCATACCGCAACAACCTGAATGCCATATGTTTATCTGGGGT 11011 Query 23902 GCTCTGGTGCTCTATCAGACAGTAGACGTAACCATCATGGCCCGTCGTGGTCTTCATCGA 23961 |||||| || || || || || |||||||||| | ||| ||||||| Sbjct 11012 CGACTGGTGTTCAATGAGCACGTGGATATAACCATCATCTTCATCCGTAGTCTTCAGGCT 11071 Query 23962 GTAGAGCA 23969 |||||||| Sbjct 11072 GTAGAGCA 11079 >seq25856 Length=3312 Score = 87.8 bits (96), Expect = 6e-13 Identities = 331/508 (65%), Gaps = 25/508 (5%) Strand=Plus/Minus Query 23594 ATATCACGGGTACGAATGTGCTTCTGCACCAGTTCCAGCAGCGCCACCCGGCGATGGGTC 23653 || ||||| | ||||||||||||| | ||| |||| ||||| | ||| || | Sbjct 2482 ATGTCACGCTGATGAATGTGCTTCTGTAACAGCGTCAGCGCCGCCATGCTGCGGTGCCCC 2423 Query 23654 AGGATTTCGTCATCCGGTATTGCAGTGATATCGACCAGCGGAAATG-CCTGATGATAAAC 23712 | |||||| |||||||| || | |||| ||| ||||| ||||| | ||| ||| | Sbjct 2422 ATGATTTCCTCATCCGGGATCACCGTGACATCCACCAGTGGAAAGGTACTG-CCATAGAG 2364 Query 23713 CGTGGCCGCCAATTCTGGCTCAGCAAAACAGTCCAGACAGCGCGTGCTGTACGGAT-ACG 23771 | |||||| || || |||| ||| || ||||| || ||||||| | | Sbjct 2363 GTTTTCCGCCAGCGAAGGGTCTTCAAATTCGTCGAGCCAGCGTGTTGAATACGGATAAGG 2304 Query 23772 GCGACGTGGTGCCGTGGTAAAACAGCAGCGGAATGACCACCGGTAGCTGATCGTTGCCCT 23831 || ||| ||||| || ||||| | ||| || |||| ||| ||||| | | |||| Sbjct 2303 GCTGCGT-TTGCCGGTATAGAACAGTACCGGTATAACCAGCGGCAGCTGCTTATGGCCCG 2245 Query 23832 GTTCTAGATGCCGCTGCATCGCGGCGACCGCATACCGTAGCAATCGAAACGCCATCAGCT 23891 ||| || || || ||||| || || || || || || | || | || ||||| || Sbjct 2244 CTTCAAGGTGGCGGTGCATAGCCGCCACAGCGTATCGCATCAGCCTGAATGCCATATGCC 2185 Query 23892 TTTCCGGGCGGCTCTGGTGCTCTATCAGACAGTAGACGTAACCATCATGGCCCG-TCGTG 23950 | ||||| ||| ||||| | ||| || | ||| ||||| || | | || Sbjct 2184 TGTCCGGCGTAGACTGATGCTCAACCAGGACGTGTATGTACCCATC----CCTGTTACTG 2129 Query 23951 GTCTTCATCGAGTAGAGCATATC---CGAGCACTGGCCCTTCAGGTCGTCTTCGATAAAT 24007 ||||||| |||||| ||||| | |||||| || |||||||| | || Sbjct 2128 GTCTTCAGGCTGTAGAGGATATCGCTGAAATACTGGC---AAAGATCGTCTTCAACGAAC 2072 Query 24008 GAGCCGGAAGCCATCGCCAATGTGCCGAAATCGC----AGCGCTTACGCAGGTGCGGC-G 24062 || ||||| | | || |||| || |||| |||| |||| || |||| | Sbjct 2071 GAACCGGATTCAAGTTTCAGGGTGCTGAGGTCGCATATAGCG----CGCA-GTTCGGCGG 2017 Query 24063 GCAGATGGATTTCCAGAAAGTCCCGAGC 24090 ||||||| | ||||| ||||| || || Sbjct 2016 GCAGATGCAGTTCCATGAAGTCGCGGGC 1989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 165807986974648