Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_009552.2 Length=40863 Score E Sequences producing significant alignments: (Bits) Value seq494847 316 5e-82 seq63939 170 5e-38 seq105800 158 3e-34 seq93888 118 3e-22 seq2677 95.1 3e-15 >seq494847 Length=1062 Score = 316 bits (350), Expect = 5e-82 Identities = 502/716 (70%), Gaps = 8/716 (1%) Strand=Plus/Minus Query 37703 AAAGAAGACCGAACGGGCGTCGGCACGCTGTCGGTGTTCGGCCGCCAGCTCCGCTTCAAC 37762 ||| | ||||| || || ||||||||||||| | || || | ||| | || ||||| Sbjct 712 AAAAATGACCGCACCGGAACCGGCACGCTGTCGATTTTTGGTCATCAGATGCGTTTCAAT 653 Query 37763 TTACAAGATGGATTTCCGCTCGTGACAACGAAAAAATTGCATATCCGCTCCATCATTTAT 37822 | || || || |||||||| || || || || || | ||| | ||||| |||||| || Sbjct 652 CTGCAGGACGGTTTTCCGCTGGTCACCACCAAGAAGTGCCATTTGCGCTCTATCATTCAT 593 Query 37823 GAACTGCTTTGGTTTTTAAAAGGCGATACGAACGTCCGCTATTTGCAGGAGAATGGCGTG 37882 || ||||| ||||| | || || || || ||| || ||| || |||| ||| ||| Sbjct 592 GAGCTGCTGTGGTTCCTTAACGGTGACACTAACATCGCCTACCTGAAGGAAAATAAGGTG 533 Query 37883 ACGATTTGGGATGAGTGGGCGGACGAAAACGGCGATCTCGGCCCGATTTACGGCGCGCAA 37942 |||| ||||| |||||||| || ||||| || || ||||| ||| |||| ||| || Sbjct 532 TCGATCTGGGACGAGTGGGCCGATGAAAAGGGTGACCTCGGGCCGGTTTATGGCAAACAG 473 Query 37943 TGGCGCTCGTGGAAGGGAGCAGACGGGAAAACCATCGACCAGATC-GCATGGGTTGTCGA 38001 |||||| ||| || ||| || ||| ||||||||| | ||| || | ||||| Sbjct 472 TGGCGCAGCTGGGGGGCAGCGGATGGGCGCCAGATCGACCAGCTGAGCAAGG-TGGTCGA 414 Query 38002 AGAGATCAAACGAAATCCGCATTCACGCCGGCTGCTGGTGAGCGCTTGGAATGTAGCAGA 38061 | || | ||| | | ||| | || ||||| | | || || ||||| || | || Sbjct 413 ACAGCTGAAAAGCGACCCGGACTCGCGCCGCATCATCGTTTCTGCATGGAACGTCGGCGA 354 Query 38062 ATTGGACGAGATGAAGCTGCCGCCGTGTCATTACGC---CTTTCAGTTCTATGTCGCCAA 38118 | |||| |||||| |||| | ||||| || ||| ||| |||||||| || || | Sbjct 353 ACTGGATGAGATGGCGCTGGCCCCGTGCCA---CGCGTTCTTCCAGTTCTACGTTGCGGA 297 Query 38119 CGGCCGGTTGTCATGCATGTGGCAGCAGCGCTCCGTTGATACGTTTTTAGGGTTGCCGTT 38178 |||| | | || ||| | | ||||||||| |||| || | || ||||||| Sbjct 296 CGGCAAGCTCTCCTGCCAACTGTATCAGCGCTCCTGCGATATCTTCCTCGGCCTGCCGTT 237 Query 38179 TAACATCGCGAGCTACGCGCTGTTGACGCATATGGTAGCCCAACAATGCGACTTGGATGT 38238 || ||||| |||||||| || || ||||||| | ||||| || |||||| |||| || Sbjct 236 CAATATCGCCAGCTACGCTTTGCTGGTGCATATGATGGCCCAGCAGTGCGACCTGGAAGT 177 Query 38239 CGGTGAACTCATTTTCACCGGCGGCGACGTCCATTTGTACAAAAATCATCTGGAACAAGC 38298 ||||| | | | ||||| ||||| |||| |||||| || || ||||| || | Sbjct 176 GGGTGATTTTGTCTGGACCGGTGGCGATACCCATCTGTACAGCAACCACCTGGAGCAGAC 117 Query 38299 GAAACTGCAGCTGACGCGCGAGCCGCGCCCGCTGCCGAAGCTTGTGCTGAAACGGAAGCC 38358 | ||||||||||||||||| |||||| | ||||||||||| | | || || ||||| Sbjct 116 GCGCCTGCAGCTGACGCGCGAACCGCGCGCCCTGCCGAAGCTGATTATCAAGCGCAAGCC 57 Query 38359 GCCGTCTATCTTTGACTATGAATACGACGACTTTGAAATCGTCGGCTACGATCCGC 38414 | ||||||||| |||||| | || ||||| || |||| || ||||| |||| Sbjct 56 GGAGTCTATCTTCGACTATCGCTTTGATGACTTCGAGATCGAAGGTTACGACCCGC 1 >seq63939 Length=2243 Score = 170 bits (188), Expect = 5e-38 Identities = 186/247 (75%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 37702 AAAAGAAGACCGAACGGGCGTCGGCACGCTGTCGGTGTTCGGCCGCCAGCTCCGCTTCAA 37761 ||||| ||||| || ||| ||| ||||| || | || || | |||| | || ||||| Sbjct 1950 AAAAGCTGACCGTACCGGCACCGGTACGCTTTCAATTTTTGGTCACCAGATGCGTTTCAA 2009 Query 37762 CTTACAAGATGGATTTCCGCTCGTGACAACGAAAAAATTGCATATCCGCTCCATCATTTA 37821 | | || ||||| |||||||| || || || || |||| ||||||||||| || ||| | Sbjct 2010 CCTGCAGGATGGTTTTCCGCTGGTCACCACCAAGAAATGTCATATCCGCTCGATTATTCA 2069 Query 37822 TGAACTGCTTTGGTTTTTAAAAGGCGATACGAACGTCCGCTATTTGCAGGAGAATGGCGT 37881 ||| ||||| |||||| | ||||||||||| ||| || | ||| | | || || ||| Sbjct 2070 TGAGCTGCTGTGGTTTCTGAAAGGCGATACCAACATCGGTTATCTCAAAGAAAACAACGT 2129 Query 37882 GACGATTTGGGATGAGTGGGCGGACGAAAACGGCGATCTCGGCCCGATTTACGGCGCGCA 37941 | || ||||||||||||||||| || || ||||||||||||||| | || ||| || Sbjct 2130 CTCCATCTGGGATGAGTGGGCGGATGAGAATGGCGATCTCGGCCCGGTGTATGGCAAACA 2189 Query 37942 ATGGCGC 37948 |||||| Sbjct 2190 GTGGCGC 2196 >seq105800 Length=3879 Score = 158 bits (174), Expect = 3e-34 Identities = 247/352 (70%), Gaps = 6/352 (2%) Strand=Plus/Plus Query 37767 AAGATGGATTTCCGCTCGTGACAACGAAAAAATTGCATATCCGCTCCATCATTTATGAAC 37826 ||| ||| |||||| | || || || ||||| || ||||| || ||||| || |||||| Sbjct 2721 AAGCTGGCTTTCCGTTGGTCACCACCAAAAAGTTACATATGCGATCCATTATCCATGAAC 2780 Query 37827 TGCTTTGGTTTTTAAAAGGCGATACGAACGTCCGCTATTTGCAGGAGAATGGCGTGACGA 37886 | | ||||| |||||||| || |||||| || |||||||| | || ||||| || | | Sbjct 2781 TAATCTGGTTCTTAAAAGGTGAGACGAACATCAGCTATTTGAAAGAAAATGGTGTTAGCA 2840 Query 37887 TTTGGGATGAGTGGGCGGACGAAAACGGCGATCTCGGCCCGATTTACGGCGCGCAATGGC 37946 |||||||||| ||||| || |||||||| || | || ||| |||| ||| | ||||||| Sbjct 2841 TTTGGGATGAATGGGCTGATGAAAACGGGAATTTAGGTCCGGTTTATGGCTCACAATGGC 2900 Query 37947 GCTCGTGGAAGGGAGCAGACGGGAAAACCATCGACCAGATCGCATGGGTTGTCGAAGAGA 38006 |||| ||| |||| ||| || ||||||||||| ||| || | | || Sbjct 2901 GCTCTTGGCCTACGCCAGATGGGCAACATATCGACCAGATTGCACAAGTCATTCATCAGC 2960 Query 38007 TCAAACGAAATCCGC---ATTCACGCCGGCTGCTGGTGAGCGCTTGGAATGTAGCAGAAT 38063 | || |||| ||| ||||| | | | | || |||||||||||||| || Sbjct 2961 TAAA---AAATACGCCCGATTCAAGAAGAATCATCGTATCGGCTTGGAATGTAGCCGAGA 3017 Query 38064 TGGACGAGATGAAGCTGCCGCCGTGTCATTACGCCTTTCAGTTCTATGTCGC 38115 | | | | ||| || || || || ||| ||||||||||||||| || Sbjct 3018 TCGGCAATATGGCACTTCCACCCTGCCATGCTTTCTTTCAGTTCTATGTAGC 3069 >seq93888 Length=1140 Score = 118 bits (130), Expect = 3e-22 Identities = 275/410 (67%), Gaps = 16/410 (4%) Strand=Plus/Plus Query 38045 GCTTGGAATGTAGCAGAATTGGACGAGATGAAGCTGCCGCCGTGTCATTACGCCTTT--- 38101 || |||||||| | ||| || || | ||| |||| | || || ||| |||||| Sbjct 33 GCATGGAATGTTGGAGAGTTAGATAAAATGGCGCTGGCACCTTGCCAT---GCCTTTTTC 89 Query 38102 CAGTTCTATGTCGCCAACGGC-----CGGTTGTCATGCATGTGGCAGCAGCGCTCCGTTG 38156 || ||||| |||| || ||| | |||| || || | | | |||||||| || Sbjct 90 CAATTCTACGTCGTGAATGGCAAACTCAGTTGCCA-GC-TCT---ATCAGCGCTCTTGTG 144 Query 38157 ATACGTTTTTAGGGTTGCCGTTTAACATCGCGAGCTACGCGCTGTTGACGCATATGGTAG 38216 || |||||||| || || ||||| ||||| ||||| ||||| || |||||||| | Sbjct 145 ATGTCTTTTTAGGCTTACCCTTTAATATCGCCAGCTATGCGCTACTGGTCCATATGGTCG 204 Query 38217 CCCAACAATGCGACTTGGATGTCGGTGAACTCATTTTCACCGGCGGCGACGTCCATTTGT 38276 | || || || || | || ||||| || | ||| || || ||||| || | | Sbjct 205 CTCAGCAGTGTGATCTCGAAGTCGGCGATTTTGTTTGGACAGGGGGCGATACGCACCTCT 264 Query 38277 ACAAAAATCATCTGGAACAAGCGAAACTGCAGCTGACGCGCGAGCCGCGCCCGCTGCCGA 38336 | ||||| | ||||||||| | | || | | || ||||| || | ||||| | Sbjct 265 ATTCTAATCACTTAGAACAAGCGCACTTACAATTAAGTCGTGAGCCTCGTGCACTGCCTA 324 Query 38337 AGCTTGTGCTGAAACGGAAGCCGCCGTCTATCTTTGACTATGAATACGACGACTTTGAAA 38396 || | || | ||||| |||||| ||||| || || || | || || || || | Sbjct 325 AGTTGGTCATTAAACGCAAGCCGGACTCTATTTTCGATTACTGTTTTGATGATTTCGAGA 384 Query 38397 TCGTCGGCTACGATCCGCATCCGGCGATTAAAGCACCGGTGGCGGTTTAA 38446 | | |||||||||||||| || ||||| ||||| || || ||| ||||| Sbjct 385 TAGAAGGCTACGATCCGCACCCTGCGATCAAAGCGCCCGTCGCGATTTAA 434 >seq2677 Length=2322 Score = 95.1 bits (104), Expect = 3e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 37706 GAAGACCGAACGGGCGTCGGCACGCTGTCGGTGTTCGGCCGCCAGCTCCGCTTCAACTTA 37765 || ||||| || || |||||| | || | ||||| | ||| | |||||| | | Sbjct 2091 GACGACCGTACCGGTACCGGCACCTTATCCATTTTCGGTCACCAAATGCGCTTCGATCTG 2150 Query 37766 CAAGATGGATTTCCGCTCGTGACAACGAAAAAATTGCATATCCGCTCCATCATTTATGAA 37825 ||| | || || || | || || |||||||||| ||| | ||||| || ||| | || Sbjct 2151 CAACAGGGCTTCCCCTTAGTCACCACGAAAAAATGCCATCTGCGCTCGATTATTCACGAG 2210 Query 37826 CTGCTTTGGTTTTTAAAAGGCGATACGAACGTCCGCTATTTGCAGGAGAATGGCGTGACG 37885 ||||| ||||||||||| || || || || || || | | ||||| || ||| Sbjct 2211 CTGCTGTGGTTTTTAAAGGGAGACACCAATATCGCTTACCTAAAAGAGAACAAGGTAACG 2270 Query 37886 ATTTGGGATGAGTGGGCGGACGAAAACGGCGATCTCGGCCCGATTTACGG 37935 ||||||||||| ||||| ||||| | ||| | | || ||| |||| || Sbjct 2271 ATTTGGGATGAATGGGCAGACGAGCAGGGCAACTTAGGTCCGGTTTATGG 2320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129865533501650