Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq176694 199 1e-46 seq374035 134 4e-27 seq180295 98.7 3e-16 seq318627 86.0 2e-12 >seq176694 Length=18178 Score = 199 bits (220), Expect = 1e-46 Identities = 299/423 (71%), Gaps = 10/423 (2%) Strand=Plus/Minus Query 2495 ACTACCTTGAAGAATTGGTTAACAAATACCCAATCATCACTATCGAAGATGGTATGGACG 2554 ||| ||| ||||| || ||| | ||||||||| || |||||||||| ||| |||| | Sbjct 739 ACTTCCTGGAAGACCTGACTAAGCAGTACCCAATCGTCTCTATCGAAGACGGTCTGGATG 680 Query 2555 AAAACGACTGGGACGGTTGGAAATCTCTTACTGAAC----GT-CTTGGTGGTAAAGTTCA 2609 || ||||||| |||| || ||||| || || || || | ||| | || Sbjct 679 AATCTGACTGGGCTGGTT-----TCGCTTACCAGACCAAAGTGCTGGGCGACAAAATCCA 625 Query 2610 ATTGGTTGGTGACGACTTCTTCGTAACTAACACTGCTTACCTTGAAAAAGGTATTGCAGA 2669 |||| |||||||| | ||||| || ||||| ||| || ||||||| | | Sbjct 624 GCTGGTGGGTGACGATCTGTTCGTTACCAACACCAAGATCCTGAAAGAAGGTATCGACAA 565 Query 2670 ACACGCTGCTAACTCAATCCTTATCAAAGTTAACCAAATCGGTACTTTGACTGAAACTTT 2729 | |||||||| ||||| |||||| | ||||| |||||| | |||| ||||| | Sbjct 564 AGGTATCGCTAACTCCATCCTGATCAAATTCAACCAGATCGGTTCACTGACCGAAACCCT 505 Query 2730 TGACGCTATCGAAATGGCGAAAGAAGCTGGATACACAGCAGTAGTATCACACCGTTCAGG 2789 | || ||| ||||||| ||||| || || ||||| || || | || ||||||||||| Sbjct 504 GGCTGCGATCAAAATGGCAAAAGACGCCGGTTACACTGCGGTGATCTCTCACCGTTCAGG 445 Query 2790 TGAAACTGAAGATTCAACAATCGCTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAA 2849 ||||||||||||| | || |||||||| | || || | || || || || || || Sbjct 444 TGAAACTGAAGATGCCACCATCGCTGACCTGGCGGTGGGTACAGCTGCAGGCCAGATCAA 385 Query 2850 GACAGGTTCATTGTCACGTACTGACCGTATTGCTAAATACAACCAATTGCTTCGTATCGA 2909 || |||||| || ||| |||||||| | ||||| |||||||| || | |||||||| Sbjct 384 AACCGGTTCAATGAGCCGTTCTGACCGTGTCGCTAAGTACAACCAGCTGATCCGTATCGA 325 Query 2910 AGA 2912 ||| Sbjct 324 AGA 322 >seq374035 Length=226 Score = 134 bits (148), Expect = 4e-27 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 2100 TCCAATGATGAACATCATCAACGGTGGTTCTCACTCAGACGCTCCAATCGCTTTCCAAGA 2159 ||| |||||||| ||||||||||||||||| ||||| || || || ||||| |||||||| Sbjct 192 TCCTATGATGAATATCATCAACGGTGGTTCACACTCTGATGCACCTATCGCATTCCAAGA 133 Query 2160 ATTTATGATTGTACCTGCTGGTGCACCAACATTCAAAGAAGCGCTTCGTTGGGGTGCTGA 2219 ||||||||| | |||| ||||| || |||| || || | ||||||||| |||| Sbjct 132 ATTTATGATCATGCCTGTGGGTGCGCCTTCATTTTCTGAGGCTTTGCGTTGGGGTACTGA 73 Query 2220 AATCTTCCACGCGCTTAAGAAAATCCTTAAAGAACGTGGACTTGAAACAGCCGTAGGTGA 2279 | ||||| | | || |||||| | | || | || ||| ||| || |||||||| Sbjct 72 GGTTTTCCATACCTTGAAAAAAATCTTACATGACAGAGGTCTTTCAACTGCAGTAGGTGA 13 Query 2280 CGAAGGTGGTTT 2291 ||||||||||| Sbjct 12 TGAAGGTGGTTT 1 >seq180295 Length=2357 Score = 98.7 bits (108), Expect = 3e-16 Identities = 219/326 (67%), Gaps = 2/326 (1%) Strand=Plus/Minus Query 2601 TAAAGTTCAATTGGTTGGTGACGACTTCTTCGTAACTAACACTGCTTACCTTGAAAAA-G 2659 |||| | ||||| || || || || || || || ||||| | | | |||||||| | Sbjct 2342 TAAAATACAATTAGTAGGAGATGATTTATTTGTTACTAATAAAAAT-ATTTTGAAAAAAG 2284 Query 2660 GTATTGCAGAACACGCTGCTAACTCAATCCTTATCAAAGTTAACCAAATCGGTACTTTGA 2719 | ||| | || | ||| || |||| | || ||| | |||||||| || || || | Sbjct 2283 GAATTAAAAAAGGTGTTGCAAATGCAATTTTAATAAAACTAAACCAAATTGGAACATTAA 2224 Query 2720 CTGAAACTTTTGACGCTATCGAAATGGCGAAAGAAGCTGGATACACAGCAGTAGTATCAC 2779 ||||||| |||| |||| ||||||| ||| || | || | || | || | Sbjct 2223 CTGAAACAATTGAAACTATTAAAATGGCAAAAAAATTTAATTATGGTGTTGTTATTTCCC 2164 Query 2780 ACCGTTCAGGTGAAACTGAAGATTCAACAATCGCTGATATTGCAGTTGCAACTAACGCTG 2839 | |||||||||||||| |||||| || |||| || ||| | |||| | ||| | | Sbjct 2163 ATCGTTCAGGTGAAACAGAAGATACATCAATAGCAGATTTATCAGTAGGAACAGCATCAG 2104 Query 2840 GTCAAATTAAGACAGGTTCATTGTCACGTACTGACCGTATTGCTAAATACAACCAATTGC 2899 | ||||| || ||||| || || ||| |||| | | ||||| || || ||||| Sbjct 2103 GACAAATCAAAACAGGATCTATGAGTCGTTCTGATAGAACAGCTAAGTATAATCAATTAA 2044 Query 2900 TTCGTATCGAAGACCAACTTGGTGAA 2925 || | || ||||| || | |||||| Sbjct 2043 TTAGAATAGAAGAAAAATTAGGTGAA 2018 >seq318627 Length=206 Score = 86.0 bits (94), Expect = 2e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 2518 AAATACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTGGAAA 2577 ||||| || ||||| | |||||||| || |||| |||||| || |||||||| |||||| Sbjct 65 AAATATCCCATCATTTCGATCGAAGACGGCATGGCCGAAAATGATTGGGACGGCTGGAAA 124 Query 2578 TCTCTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTAACT 2637 || || || | ||||| ||||| || |||| ||||||||||| ||||| || Sbjct 125 CTGCTGACCGACCAACTTGGCAAGAAAGTGCAGCTGGTCGGTGACGACTTGTTCGTGACC 184 Query 2638 AACAC 2642 || || Sbjct 185 AATAC 189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155113365452724