Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_031918.1 Length=45342 Score E Sequences producing significant alignments: (Bits) Value seq497144 196 1e-45 seq136258 161 3e-35 seq153502 150 5e-32 seq226697 105 2e-18 seq83212 87.8 5e-13 >seq497144 Length=1636 Score = 196 bits (216), Expect = 1e-45 Identities = 221/296 (75%), Gaps = 0/296 (0%) Strand=Plus/Minus Query 33619 ACAATTTCTGTGGTGTATTTTTCAACTCCAGCATTATCAGTCCATTTTCTAGTGCGCAAC 33678 |||| ||| |||||||| || ||||| ||||| | ||||||||||| | || ||| Sbjct 1414 ACAACTTCGGTGGTGTACTTCTCAACGCCAGCCTGGTCAGTCCATTTACGGGTCTGCAGT 1355 Query 33679 TGACCTTCAAAATAAACTTGTGAGCCTTTCCTAAGATACTCACCAGCAATTTCAGCGAGC 33738 ||||| | |||||| || |||||||| | || || ||||| || | |||||| ||| Sbjct 1354 GCGCCTTCGATATAAACCTGAGAGCCTTTACGCAGGTATTCACCGGCCACTTCAGCCAGC 1295 Query 33739 TTGCCAAAGATAACTACGCGGTGCCATTCAGTTTGCTCCTTTTTCTCACCAGTAGCCTTA 33798 ||||| || | || ||||||||||||||||||| ||| || | || || || ||| Sbjct 1294 TTGCCGAACAGCACAACGCGGTGCCATTCAGTTTTCTCTTTGGTTTCGCCGGTCTGCTTG 1235 Query 33799 TCATTCCATGATTCCGATGTAGCAACAGATACGTTGGCAACAGCGCCGCCATTTGGCATG 33858 || ||| ||||| || ||||| | || | ||||||||| || |||||||| |||||| Sbjct 1234 TCGCGCCAGGATTCGGAGGTAGCCAGAGTGATGTTGGCAACGGCACCGCCATTCGGCATG 1175 Query 33859 TATCGCACTTCTGGGTCCTGGCCTAATGTGCCGAGGATGATTACTTTATTTACGCC 33914 || || ||||| |||||||| || | | |||| | |||||||| |||||||| Sbjct 1174 TAGCGAACTTCCGGGTCCTGCCCCAGATTTCCGACTAAAATTACTTTGTTTACGCC 1119 >seq136258 Length=1331 Score = 161 bits (178), Expect = 3e-35 Identities = 196/267 (73%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 33660 CCATTTTCTAGTGCGCAACTGACCTTCAAAATAAACTTGTGAGCCTTTCCTAAGATACTC 33719 |||||| | ||||||| ||| ||||| | ||| || || || ||||| | || || || Sbjct 94 CCATTTACGGGTGCGCAGCTGGCCTTCGATATAGACCTGCGACCCTTTTTTCAGGTATTC 153 Query 33720 ACCAGCAATTTCAGCGAGCTTGCCAAAGATAACTACGCGGTGCCATTCAGTTTGCTCCTT 33779 ||| || | |||||| || |||||||| | ||| || |||||||||||||| ||| || Sbjct 154 ACCCGCGACTTCAGCCAGTTTGCCAAACAGAACCACACGGTGCCATTCAGTGATCTCTTT 213 Query 33780 TTTCTCACCAGTAGCCTTATCATTCCATGATTCCGATGTAGCAACAGATACGTTGGCAAC 33839 || ||||| || ||| || ||| |||||| ||||| | | | ||||||||| Sbjct 214 GTTTTCACCGGTCTGCTTGTCGCGCCAGCTTTCCGACGTAGCCAGCGTAATGTTGGCAAC 273 Query 33840 AGCGCCGCCATTTGGCATGTATCGCACTTCTGGGTCCTGGCCTAATGTGCCGAGGATGAT 33899 |||||| ||||||||||| || || ||||| || ||||| || | | |||| | || Sbjct 274 AGCGCCACCATTTGGCATATAACGTACTTCCGGATCCTGACCCAGATTCCCGACAAGAAT 333 Query 33900 TACTTTATTTACGCCGCGAGTTGCCAT 33926 ||||| || ||||| ||| | ||||| Sbjct 334 CACTTTGTTAACGCCACGACTGGCCAT 360 >seq153502 Length=4143 Score = 150 bits (166), Expect = 5e-32 Identities = 194/268 (72%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 33660 CCATTTTCTAGTGCGCAACTGACCTTCAAAATAAACTTGTGAGCCTTTCCTAAGATACTC 33719 |||||| | || |||| |||||||| | |||||| || |||||||| | ||||| || Sbjct 2000 CCATTTGCGCGTACGCAGTTGACCTTCGATATAAACCTGAGAGCCTTTACGCAGATATTC 2059 Query 33720 ACCAGCAATTTCAGCGAGCTTGCCAAAGATAACTACGCGGTGCCATTCAGTTTGCTCCTT 33779 ||||||| ||| || | || || || | || || |||||||||||||| ||| || Sbjct 2060 GCCAGCAACTTCTGCTAATTTACCGAACAACACAACACGGTGCCATTCAGTAATCTCTTT 2119 Query 33780 TTTCTCACCAGTAGCCTTATCATTCCATGATTCCGATGTAGCAACAGATACGTTGGCAAC 33839 || ||||| || ||||||| ||| ||| || || || | | | ||| | || Sbjct 2120 ATTTTCACCGGTTTGCTTATCACGCCAGCTTTCAGAGGTTGCCAGTGTAATGTTTGTCAC 2179 Query 33840 AGCGCCGCCATTTGGCATGTATCGCACTTCTGGGTCCTGGCCTAATGTGCCGAGGATGAT 33899 ||| || ||||||||||| || || |||||||| || || || || | |||| | || Sbjct 2180 AGCCCCTCCATTTGGCATATACCGGACTTCTGGATCTTGACCCAAATTACCGACAAGAAT 2239 Query 33900 TACTTTATTTACGCCGCGAGTTGCCATT 33927 ||||| |||||||||||| | |||||| Sbjct 2240 CACTTTGTTTACGCCGCGACTGGCCATT 2267 >seq226697 Length=878 Score = 105 bits (116), Expect = 2e-18 Identities = 159/223 (71%), Gaps = 11/223 (5%) Strand=Plus/Plus Query 33588 CATTTGCATCACACCACCCATTTGCTGGATAAC---AATTTCTGTGGTGTATTTTTCAAC 33644 |||||||||| ||| || || | |||| ||||||||| || || ||||| Sbjct 658 CATTTGCATCGTACCGCCAATGT------TAACTATAATTTCTGTTGTATAACGTTCAAG 711 Query 33645 TCCAGCATTATCAGTCCATTTTCTAGTGCGCAACTGA-CCTTCAAAATAAACTTGTGAGC 33703 ||| | || |||||||||||| | || || ||||||| ||| ||||| || | Sbjct 712 ACCATTTTGGTCTTGCCATTTTCTAGTTTG-AAGGGATCCTTCAATATATACTTGAGAAC 770 Query 33704 CTTTCCTAAGATACTCACCAGCAATTTCAGCGAGCTTGCCAAAGATAACTACGCGGTGCC 33763 |||| || | ||| || |||||||||||||| | || ||||| | |||| | |||| Sbjct 771 CTTTTCTCAAATATTCTCCAGCAATTTCAGCCAATTTTCCAAATAATACTATTCTATGCC 830 Query 33764 ATTCAGTTTGCTCCTTTTTCTCACCAGTAGCCTTATCATTCCA 33806 |||| |||| ||| || || ||||||||| ||||| ||||| Sbjct 831 ATTCTGTTTTCTCTTTATTTTCACCAGTATTTTTATCTTTCCA 873 >seq83212 Length=3491 Score = 87.8 bits (96), Expect = 5e-13 Identities = 129/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 28926 AAAACATCACCTAATACCGGCCTGAAGGCACAGACAAACATTGCGCGCAATGGAGAGGCG 28985 ||||| || | |||| | |||| |||| ||| | ||| | || || ||||| ||||| Sbjct 1756 AAAACTTCGTCGAATAACAGCCTTAAGGGTCAGTCTAACCTCGCTCGTAATGGTGAGGCA 1815 Query 28986 CGACCTGATAACTTCGGGCAGATTCGCGCGTTTCCTGATTTGCTTCAGGAATCATTATTT 29045 ||||| || | || | |||| | || || ||||| | ||||||| || | || Sbjct 1816 AAGCCTGACAATTATGGTCTGATTAGGGCTTTCCCTGACCTTATTCAGGAGTCTCTGTTC 1875 Query 29046 GAATATATCAAT-AACATTAAATACGTCACCGAGTTCATGAACTTTGGTCTCGGTAAGTA 29104 || ||| ||| ||| | |||||| ||||||||||||||||||||||| | || | ||| Sbjct 1876 GAGTAT-TCAGGCAACCTCAAATACCTCACCGAGTTCATGAACTTTGGTATTGGAAGGTA 1934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144113365089008