Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq54714 96.9 5e-15 seq195257 95.1 2e-14 seq77726 89.7 7e-13 seq472897 86.0 9e-12 >seq54714 Length=4730 Score = 96.9 bits (106), Expect = 5e-15 Identities = 67/75 (89%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 142793 GGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGAG 142851 ||||||||||||||| ||| |||||| ||||| ||||| ||||| ||||||||||||| Sbjct 2583 GGGGAATTAGCTCAGCTGGCTAGAGCACCTGCCTTGCACGCAGGGGGTCAACGGTTCGAA 2524 Query 142852 TCCGTTATTCTCCAC 142866 ||||||||||||||| Sbjct 2523 TCCGTTATTCTCCAC 2509 >seq195257 Length=6037 Score = 95.1 bits (104), Expect = 2e-14 Identities = 252/385 (65%), Gaps = 10/385 (3%) Strand=Plus/Plus Query 162454 ATCTACCAAGCGAGCACCAGTGAGCTTTATGGGCTAGTTCAGGAGACACCCCAGAAAGAA 162513 || |||||||| ||| || || ||||| |||| || | | ||| || |||| Sbjct 451 ATATACCAAGCCTCTACCTCCGAACTGTATGGTTTAGTGCAAGCGGTACCACAATCAGAA 510 Query 162514 ACCACTCCAATGTATCCACGATCCCCTTATGGAGTTGCTAAACTATATGGGTTCTGGATC 162573 || || || | |||||| || ||||||| || || ||| | |||| | ||||| Sbjct 511 ACGACACCTTTTTATCCAAGAAGTCCTTATGCTGTCGCAAAAATGTATGCTTATTGGATT 570 Query 162574 ATCAAAAACTACAGGGAAAGCTATGACATACATGCCTCTAGCGGTATTCTATTCAATCAC 162633 | || ||||||||| ||| | || ||| | | ||||| || || || ||| Sbjct 571 ACGGTGAATTACAGGGAAGCCTACGGTATGTTTGCTTGCAATGGTATCCTGTTTAACCAC 630 Query 162634 GAAAGCTCACGCAGAGGAGAGACGTTCGTCACACGCAAGATCGTCCGAGCCTTGTCC--- 162690 ||||| | | || || || |||||||| |||||||| || || | | Sbjct 631 GAAAGTCCGGTTCGCGGCGAAACCTTCGTCACGCGCAAGATTACACGTGCAGCGGCGAAG 690 Query 162691 --CGAATTAGTGTGGGACTCCAAAGTGATCTACAACTTGGAAACCTCAATGCCCGACGTG 162748 || ||||| | | | |||| | | | | ||||| || ||| | ||| | Sbjct 691 ATCGCATTAGGATTGCAGGACAAATTATTTT-----TAGGAAATCTATCTGCGCAACGCG 745 Query 162749 ACTGGGGACACGCCAAAGACTACGTAGAGGCTATGTGGTTGATGCTTCAGCAAGAGAAGC 162808 | ||||||||||| ||||| |||||||| || |||||| | ||||| || ||||| || | Sbjct 746 ATTGGGGACACGCTAAAGATTACGTAGAAGCGATGTGGCTTATGCTGCAACAAGAAAAAC 805 Query 162809 CAGATGATTATGTGATCGCAACTGG 162833 | || ||||| || || ||||| || Sbjct 806 CCGAAGATTACGTCATTGCAACCGG 830 >seq77726 Length=20440 Score = 89.7 bits (98), Expect = 7e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 162736 AATGCCCGACGTGACTGGGGACACGCCAAAGACTACGTAGAGGCTATGTGGTTGATGCTT 162795 |||||| ||| |||||||| || || ||||| || ||||| || |||||| ||| | Sbjct 12785 AATGCCTTACGCGACTGGGGGCATGCAAAAGATTATGTAGAAGCCATGTGGCGGATCTTA 12844 Query 162796 CAGCAAGAGAAGCCAGATGATTATGTGATCGCAACTGGT 162834 |||||||| |||||||| ||||||||||| || || ||| Sbjct 12845 CAGCAAGATAAGCCAGAGGATTATGTGATTGCTACAGGT 12883 >seq472897 Length=387 Score = 86.0 bits (94), Expect = 9e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 142793 GGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGAGT 142852 |||| |||||||||| ||| ||||| ||||||||||||||||| ||| |||||||| Sbjct 77 GGGGGATTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGGGTCGTCGGTTCGATC 18 Query 142853 CCGTTATTCTCCACCAA 142869 |||| || ||||||||| Sbjct 17 CCGTCATCCTCCACCAA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 687144313083960