Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Triticum_20urartu_20[genbank_20GCA_5F000347455.1_202013-04-02] 499,221 sequences; 3,747,047,519 total letters Query= NC_031940.1 Length=77375 Score E Sequences producing significant alignments: (Bits) Value seq194023 149 3e-31 seq123396 109 3e-19 seq37562 98.7 5e-16 seq421177 87.8 9e-13 seq459734 84.2 1e-11 >seq194023 Length=5833 Score = 149 bits (164), Expect = 3e-31 Identities = 147/190 (77%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 68636 CATGAGCATGGAGCTGATGGTTAAAGCGATGAAAATTCGAGTGGGTAATCCATTGCGAAA 68695 |||||||||| | | |||| |||||| |||| ||| || || || ||||| |||| Sbjct 1271 CATGAGCATGAATTTAATGGCTAAAGCCATGAGCATTAAGGTTGGCAACCCATTAAGAAA 1212 Query 68696 ACTGGTTCTGATCAAGCTGGCTGATAATGCCAGCGATCAGGGTGAGTGCTGGCCCAGCTA 68755 || || ||||| ||||| ||||| || |||| |||| | || || |||||||| ||| Sbjct 1211 GCTTGTGCTGATAAAGCTTGCTGACAACGCCAACGATAAAGGCGAATGCTGGCCTTCCTA 1152 Query 68756 CCAGCATATTGCTGACCAGTGCGAGATTAGCAAACGTTCTGTGATGAATCATATTGCGGC 68815 |||||| ||||| |||||||||||||| ||||| || || |||||| |||||||| | Sbjct 1151 CCAGCACATTGCCGACCAGTGCGAGATAAGCAAGCGGTCAGTGATGCGTCATATTGATGA 1092 Query 68816 CCTTTGTGAG 68825 |||||| ||| Sbjct 1091 CCTTTGCGAG 1082 >seq123396 Length=12579 Score = 109 bits (120), Expect = 3e-19 Identities = 104/130 (80%), Gaps = 5/130 (4%) Strand=Plus/Minus Query 34503 AAACCTCGCTTCGGCGGGGTTTTTTGCTTTTCTGGAGGTCAATAATGCAGGGCGAAAAGC 34562 |||||||||| |||||||||||||||| ||||||||| || | |||| ||||||||| Sbjct 2549 AAACCTCGCTCCGGCGGGGTTTTTTGC-TTTCTGGAGTGCAGTTATGCCTAGCGAAAAGC 2491 Query 34563 AGCAGCCATAtttttttAACCCTGGTATGA--CTGTTGAACAGCTTGAAGACTGGCTGGA 34620 | ||||| ||||| | ||| || || |||| | |||| |||||||| || ||||| | Sbjct 2490 AACAGCCCTATTTCTATAATCCCGGCATGAACCCGTTG--CAGCTTGAGGAATGGCTAAA 2433 Query 34621 GCAGCAAAAG 34630 ||||||||| Sbjct 2432 TCAGCAAAAG 2423 Score = 102 bits (112), Expect = 4e-17 Identities = 101/129 (78%), Gaps = 4/129 (3%) Strand=Plus/Minus Query 73966 AAACCTCGCTTCGGCGGGGTTTTTGCTTTTCTGGAGGTCAATAATGCAGGGCGAAAAGCA 74025 |||||||||| ||||||||||||| ||||||||| || | |||| |||||||||| Sbjct 2549 AAACCTCGCTCCGGCGGGGTTTTTTGCTTTCTGGAGTGCAGTTATGCCTAGCGAAAAGCA 2490 Query 74026 GCAGCCATAtttttttAACCCTGGTATGA--CTGTTGAACAGCTTGAAGACTGGCTGGAG 74083 ||||| ||||| | ||| || || |||| | |||| |||||||| || ||||| | Sbjct 2489 ACAGCCCTATTTCTATAATCCCGGCATGAACCCGTTG--CAGCTTGAGGAATGGCTAAAT 2432 Query 74084 CAGCAAAAG 74092 ||||||||| Sbjct 2431 CAGCAAAAG 2423 >seq37562 Length=17931 Score = 98.7 bits (108), Expect = 5e-16 Identities = 220/328 (67%), Gaps = 2/328 (1%) Strand=Plus/Plus Query 23010 TCATCAATATCCAGATCGCGGCGTTCAGTTGCCAGCATGGTAAGATCTGCATACTTCACT 23069 ||||| | | ||| ||| ||||| ||||| ||||||| || ||||| ||| ||| Sbjct 4494 TCATCCAGACCCAAATCACGGCGCTCAGTACCCAGCATCACCAGGTCTGCCATCTTTACT 4553 Query 23070 AC-GCTGGCTTCTTCCAGTGGCAAGCCAAACTTAAAGCGGATCAGTTGATCGGTACGTTT 23128 | | || | | | | |||| | || |||||| || |||| | || |||| Sbjct 4554 GCAGGTGACAT-TGCTGGTGGAAGTCCGAACTTATTACGAATCACTGCGTCAACACGTCC 4612 Query 23129 CTCAATCTCGCGATAATCAGGCAGTAACGCTTTTAATGGGGCAGGGATATCCTGGCAATA 23188 |||||| | |||| ||||| || | ||||| | ||| | | ||| || |||||| Sbjct 4613 CTCAATGGCCTGATAGTCAGGTAGCAGGGCTTTCAGTGGTGAATTGATGTCGCTGCAATA 4672 Query 23189 CGCTTCGGCTGCGTCGTGCATCAGGGCTTCAAAGGCAAACTCCGGTGATACAAGCTGGCT 23248 ||||| || || ||||||| |||||||||| || || | | || || | ||| Sbjct 4673 AGCTTCAGCGGCATCGTGCAGAAGGGCTTCAAGAGCGTGTTCATGCGGCACCAGATAGCT 4732 Query 23249 GCACAGTACGGAATGCTGCGCCACGCTATAAAATTCAGGGAGATGTCCGGAGAAGCGGCA 23308 | | || || ||||| || ||||| || ||||| | ||| || | ||| ||||| Sbjct 4733 GACGTGAACAGAGTGCTGGGCTACGCTGTAGAATTCGCTCACATGGCCAGTGAACCGGCA 4792 Query 23309 AATATTGGAAAGCGCCACGGCGATATCT 23336 |||||| || || || | ||||||||| Sbjct 4793 AATATTCGACAGAGCGGCAGCGATATCT 4820 Score = 98.7 bits (108), Expect = 5e-16 Identities = 220/328 (67%), Gaps = 2/328 (1%) Strand=Plus/Plus Query 62600 TCATCAATATCCAGATCGCGGCGTTCAGTTGCCAGCATGGTAAGATCTGCATACTTCACT 62659 ||||| | | ||| ||| ||||| ||||| ||||||| || ||||| ||| ||| Sbjct 4494 TCATCCAGACCCAAATCACGGCGCTCAGTACCCAGCATCACCAGGTCTGCCATCTTTACT 4553 Query 62660 AC-GCTGGCTTCTTCCAGTGGCAAGCCAAACTTAAAGCGGATCAGTTGATCGGTACGTTT 62718 | | || | | | | |||| | || |||||| || |||| | || |||| Sbjct 4554 GCAGGTGACAT-TGCTGGTGGAAGTCCGAACTTATTACGAATCACTGCGTCAACACGTCC 4612 Query 62719 CTCAATCTCGCGATAATCAGGCAGTAACGCTTTTAATGGGGCAGGGATATCCTGGCAATA 62778 |||||| | |||| ||||| || | ||||| | ||| | | ||| || |||||| Sbjct 4613 CTCAATGGCCTGATAGTCAGGTAGCAGGGCTTTCAGTGGTGAATTGATGTCGCTGCAATA 4672 Query 62779 CGCTTCGGCTGCGTCGTGCATCAGGGCTTCAAAGGCAAACTCCGGTGATACAAGCTGGCT 62838 ||||| || || ||||||| |||||||||| || || | | || || | ||| Sbjct 4673 AGCTTCAGCGGCATCGTGCAGAAGGGCTTCAAGAGCGTGTTCATGCGGCACCAGATAGCT 4732 Query 62839 GCACAGTACGGAATGCTGCGCCACGCTATAAAATTCAGGGAGATGTCCGGAGAAGCGGCA 62898 | | || || ||||| || ||||| || ||||| | ||| || | ||| ||||| Sbjct 4733 GACGTGAACAGAGTGCTGGGCTACGCTGTAGAATTCGCTCACATGGCCAGTGAACCGGCA 4792 Query 62899 AATATTGGAAAGCGCCACGGCGATATCT 62926 |||||| || || || | ||||||||| Sbjct 4793 AATATTCGACAGAGCGGCAGCGATATCT 4820 Score = 95.1 bits (104), Expect = 6e-15 Identities = 393/624 (63%), Gaps = 67/624 (11%) Strand=Plus/Plus Query 71231 AAGCATGAATAATTTAATGGTCATTGATGGTATCGAAGTTCGCCGCGACGTTCATGGG-- 71288 ||| |||||| | ||| | || |||||||| | || |||| || | | | || Sbjct 13139 AAGTATGAATCAGTTACTCGTAATTGATGGCGTTTCTGTACGCCAGGA--TACCTCGGGA 13196 Query 71289 CGCTATTGTCTTAACGATTTGCACCGTGCTGCTGGTGGAGATCAGAAATATCGTCCGAAA 71348 |||||||| || |||||||| ||||| |||||||||||||| || || || Sbjct 13197 CGCTATTGCCTGAACGATTTACACCGCGCTGCTGGTGGAGAGGAGCGGCATAAGCCTCGT 13256 Query 71349 TACTGGCTTGATAATAAGCAAACCCGTGAGCTGATTGAGCAACTTTTCACCGAGGGCGGA 71408 | |||||| | || |||| || | ||||| | || || || |||||||| ||| Sbjct 13257 TTCTGGCTGGGGAACCAGCAGACGCAGGAGCTTGTACAGGAA---TTAACCGAGGGTGGA 13313 Query 71409 ATTCCATCATCGGAACAAAATCAATCAGTTAGCTTTTTTCAGGGCGGTAGTGATACCCGA 71468 | ||| | | ||||||||||||| ||||||| | |||| |||| |||||| || Sbjct 13314 AATCCTCCCTTGGAACAAAATCAACCAGTTAGAGTAATTCA---CGGTGGTGATAACC-- 13368 Query 71469 AGTTTGGTACGTGCTCCAGTAAATACTGTTCGCGGTGGCGCTGAACAAGGTACATACGTA 71528 ||||| || || ||| Sbjct 13369 ----------------------------------GTGGC------------ACCTATGTA 13382 Query 71529 TGCAAAGAACTGGTGTTTGCTTATGCAATGTGGATCAGCCCGTCTTTCCATCTTAAGGTG 71588 |||||||| ||||| | |||||||||||||||||||| |||| ||| || ||||| Sbjct 13383 TGCAAAGAGCTGGTTTACTCTTATGCAATGTGGATCAGCTCGTCATTCAGCCTGAAGGTT 13442 Query 71589 ATCCGCACGTTCGAT--CGGATTACCAGTGCGCCACAAACATCTTCTGGTATGGCT---G 71643 ||| | || || ||| | | | || | || ||| || || || | | | Sbjct 13443 ATCAGGACCTTTGATTCAGTAGTGACA--GGGCAACATACCTCACAGGGACCGAATCGGG 13500 Query 71644 CCGATAAGATGCAGGCGGGGGTGATTCTGC-TGGGTTTTATGCGCAAAGAGTTAAACCTG 71702 | ||| || |||||||||| || ||||| | || || | | | | | || ||| Sbjct 13501 CAGATCAGGTGCAGGCGGGCGTAATTCTACTTGAGTCTGCCTCACGTA-CCCTGAATCTG 13559 Query 71703 TCCAATTCATCGGTACTGGGCGCGTGTCAGAAACTCCAGGAGGCAGTGGGACTACCTAAC 71762 || || ||||| ||||| || | |||||||| ||||| | || || || ||| Sbjct 13560 TCGAACTCATCAAAGCTGGGTGCTTACCAGAAACTTCAGGATTTCGCTGGCCTGCCAAAC 13619 Query 71763 CTGGCGCCACAATATGCCATTGATGCTCCGGCTGGCGCGCTGGATGGTTCAAGCCGCCCG 71822 || ||| |||||||||||| || || ||| | | ||||||||||||||||| Sbjct 13620 ATGATGCCTTCATATGCCATTGACGCGCCCTCTGATTCCATTGATGGTTCAAGCCGCCCC 13679 Query 71823 ACGCTGGCACTGAGCGCGCTGTTA 71846 || |||| || | | ||||| || Sbjct 13680 ACAATGGCCCTCACCACGCTGCTA 13703 Score = 95.1 bits (104), Expect = 6e-15 Identities = 101/130 (78%), Gaps = 5/130 (4%) Strand=Plus/Plus Query 34503 AAACCTCGCTTCGGCGGGGTTTTTTGCTTTTCTGGAGGTCAATAATGCAGGGCGAAAAGC 34562 ||||| |||| ||||||| |||||||| ||||||||| || | ||||| ||||||||| Sbjct 15467 AAACCCCGCTCCGGCGGGTTTTTTTGC-TTTCTGGAGTGCAGTTATGCAAAGCGAAAAGC 15525 Query 34563 AGCAGCCATAtttttttAACCCTGGTATGA--CTGTTGAACAGCTTGAAGACTGGCTGGA 34620 | || || ||||| | ||| |||| |||| | ||| |||||||| || ||||| | Sbjct 15526 AACAACCCTATTTCTATAATCCTGACATGAACCCATTG--CAGCTTGAGGAGTGGCTAAA 15583 Query 34621 GCAGCAAAAG 34630 ||||||||| Sbjct 15584 TCAGCAAAAG 15593 Score = 93.3 bits (102), Expect = 2e-14 Identities = 357/567 (63%), Gaps = 63/567 (11%) Strand=Plus/Plus Query 31822 GGGCGCTATTGTCTTAACGATTTGCACCGTGCTGCTGGTGGAGATCAGAAATATCGTCCG 31881 || |||||||| || |||||||| ||||| |||||||||||||| || || || Sbjct 13194 GGACGCTATTGCCTGAACGATTTACACCGCGCTGCTGGTGGAGAGGAGCGGCATAAGCCT 13253 Query 31882 AAATACTGGCTTGATAATAAGCAAACCCGTGAGCTGATTGAGCAACTTTTCACCGAGGGC 31941 | |||||| | || |||| || | ||||| | || || || |||||||| Sbjct 13254 CGTTTCTGGCTGGGGAACCAGCAGACGCAGGAGCTTGTACAGGAA---TTAACCGAGGGT 13310 Query 31942 GGAATTCCATCATCGGAACAAAATCAATCAGTTAGCTTTTTTCAGGGCGGTAGTGATACC 32001 |||| ||| | | ||||||||||||| ||||||| | |||| |||| |||||| | Sbjct 13311 GGAAATCCTCCCTTGGAACAAAATCAACCAGTTAGAGTAATTCA---CGGTGGTGATAAC 13367 Query 32002 CGAAGTTTGGTACGTGCTCCAGTAAATACTGTTCGCGGTGGCGCTGAACAAGGTACATAC 32061 | ||||| || || Sbjct 13368 C------------------------------------GTGGC------------ACCTAT 13379 Query 32062 GTATGCAAAGAACTGGTGTTTGCTTATGCAATGTGGATCAGCCCGTCTTTCCATCTTAAG 32121 ||||||||||| ||||| | |||||||||||||||||||| |||| ||| || ||| Sbjct 13380 GTATGCAAAGAGCTGGTTTACTCTTATGCAATGTGGATCAGCTCGTCATTCAGCCTGAAG 13439 Query 32122 GTGATCCGCACGTTCGAT--CGGATTACCAGTGCGCCACAAACATCTTCTGGTATGGCT- 32178 || ||| | || || ||| | | | || | || ||| || || || | | Sbjct 13440 GTTATCAGGACCTTTGATTCAGTAGTGACA--GGGCAACATACCTCACAGGGACCGAATC 13497 Query 32179 --GCCGATAAGATGCAGGCGGGGGTGATTCTGC-TGGGTTTTATGCGCAAAGAGTTAAAC 32235 || ||| || |||||||||| || ||||| | || || | | | | | || Sbjct 13498 GGGCAGATCAGGTGCAGGCGGGCGTAATTCTACTTGAGTCTGCCTCACGTA-CCCTGAAT 13556 Query 32236 CTGTCCAATTCATCGGTACTGGGCGCGTGTCAGAAACTCCAGGAGGCAGTGGGACTACCT 32295 ||||| || ||||| ||||| || | |||||||| ||||| | || || || Sbjct 13557 CTGTCGAACTCATCAAAGCTGGGTGCTTACCAGAAACTTCAGGATTTCGCTGGCCTGCCA 13616 Query 32296 AACCTGGCGCCACAATATGCCATTGATGCTCCGGCTGGCGCGCTGGATGGTTCAAGCCGC 32355 ||| || ||| |||||||||||| || || ||| | | ||||||||||||||| Sbjct 13617 AACATGATGCCTTCATATGCCATTGACGCGCCCTCTGATTCCATTGATGGTTCAAGCCGC 13676 Query 32356 CCGACGCTGGCACTGAGCGCGCTGTTA 32382 || || |||| || | | ||||| || Sbjct 13677 CCCACAATGGCCCTCACCACGCTGCTA 13703 >seq421177 Length=258 Score = 87.8 bits (96), Expect = 9e-13 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 75297 CAGCAGGCTGATGCCCTTGGCAGAACATCCGGACATGCAGCTCGTCAGGATGCTATTGCC 75356 ||||| ||| |||| || ||| | | | ||| || ||||| || || || ||||| Sbjct 223 CAGCAAGCTTATGCACTAGGCCGCTCTACTGGAAATCCAGCTAAGCAAGAAGCGATTGCT 164 Query 75357 AATCTGGTGTATAGCAACCGGCTGGGTAACAAAGCACCCGGTGATGGCTGGAAATATCGT 75416 || || || || |||||| ||||||| || | | || |||||| ||||| ||||| Sbjct 163 AACCTTGTTTACTACAACCGTATGGGTAATAAGTCTCGCGATGATGGTTGGAAGTATCGG 104 Query 75417 GGTAGAGGATTAATTCAAATCACTGGCCTCCATAATTA 75454 ||| | ||| |||| ||||||||||| || | ||||| Sbjct 103 GGTCGCGGACTAATCCAAATCACTGGGCTAGAGAATTA 66 Score = 87.8 bits (96), Expect = 9e-13 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 35834 CAGCAGGCTGATGCCCTTGGCAGAACATCCGGACATGCAGCTCGTCAGGATGCTATTGCC 35893 ||||| ||| |||| || ||| | | | ||| || ||||| || || || ||||| Sbjct 223 CAGCAAGCTTATGCACTAGGCCGCTCTACTGGAAATCCAGCTAAGCAAGAAGCGATTGCT 164 Query 35894 AATCTGGTGTATAGCAACCGGCTGGGTAACAAAGCACCCGGTGATGGCTGGAAATATCGT 35953 || || || || |||||| ||||||| || | | || |||||| ||||| ||||| Sbjct 163 AACCTTGTTTACTACAACCGTATGGGTAATAAGTCTCGCGATGATGGTTGGAAGTATCGG 104 Query 35954 GGTAGAGGATTAATTCAAATCACTGGCCTCCATAATTA 35991 ||| | ||| |||| ||||||||||| || | ||||| Sbjct 103 GGTCGCGGACTAATCCAAATCACTGGGCTAGAGAATTA 66 >seq459734 Length=325 Score = 84.2 bits (92), Expect = 1e-11 Identities = 93/120 (78%), Gaps = 3/120 (3%) Strand=Plus/Minus Query 65835 AAAGCCAAAGACATAGATGCCATCACCATCGAACTGGTTGA-TGCTTATATCGACAAAAA 65893 |||| | || ||||| || ||||| |||||||| | | | |||| | ||||||||||| Sbjct 157 AAAGTCGAAAACATAAATTCCATCTCCATCGAAGTTGCACACTGCT-ACATCGACAAAAA 99 Query 65894 TAAGATCTCCCGGTTCAATTGTTGGCGCCATGCTGTCACCGCGCACGTTAATCA-CTTTA 65952 | ||||| || || ||||| ||| |||||||||| ||||| ||||| |||| ||||| Sbjct 98 TCAGATCGCCAGGCTCAATGGTTCCTTCCATGCTGTCGCCGCGAACGTTGATCAGCTTTA 39 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 245969497545016